microproduct/atmosphericDelay/ISCEApp/site-packages/whoosh/automata/fsa.py

716 lines
20 KiB
Python

from __future__ import print_function
import itertools
import operator
import sys
from bisect import bisect_left
from collections import defaultdict
from whoosh.compat import iteritems, next, text_type, unichr, xrange
unull = unichr(0)
# Marker constants
class Marker(object):
def __init__(self, name):
self.name = name
def __repr__(self):
return "<%s>" % self.name
EPSILON = Marker("EPSILON")
ANY = Marker("ANY")
# Base class
class FSA(object):
def __init__(self, initial):
self.initial = initial
self.transitions = {}
self.final_states = set()
def __len__(self):
return len(self.all_states())
def __eq__(self, other):
if self.initial != other.initial:
return False
if self.final_states != other.final_states:
return False
st = self.transitions
ot = other.transitions
if list(st) != list(ot):
return False
for key in st:
if st[key] != ot[key]:
return False
return True
def all_states(self):
stateset = set(self.transitions)
for src, trans in iteritems(self.transitions):
stateset.update(trans.values())
return stateset
def all_labels(self):
labels = set()
for src, trans in iteritems(self.transitions):
labels.update(trans)
return labels
def get_labels(self, src):
return iter(self.transitions.get(src, []))
def generate_all(self, state=None, sofar=""):
state = self.start() if state is None else state
if self.is_final(state):
yield sofar
for label in sorted(self.get_labels(state)):
newstate = self.next_state(state, label)
for string in self.generate_all(newstate, sofar + label):
yield string
def start(self):
return self.initial
def next_state(self, state, label):
raise NotImplementedError
def is_final(self, state):
raise NotImplementedError
def add_transition(self, src, label, dest):
raise NotImplementedError
def add_final_state(self, state):
raise NotImplementedError
def to_dfa(self):
raise NotImplementedError
def accept(self, string, debug=False):
state = self.start()
for label in string:
if debug:
print(" ", state, "->", label, "->")
state = self.next_state(state, label)
if not state:
break
return self.is_final(state)
def append(self, fsa):
self.transitions.update(fsa.transitions)
for state in self.final_states:
self.add_transition(state, EPSILON, fsa.initial)
self.final_states = fsa.final_states
# Implementations
class NFA(FSA):
def __init__(self, initial):
self.transitions = {}
self.final_states = set()
self.initial = initial
def dump(self, stream=sys.stdout):
starts = self.start()
for src in self.transitions:
beg = "@" if src in starts else " "
print(beg, src, file=stream)
xs = self.transitions[src]
for label in xs:
dests = xs[label]
end = "||" if self.is_final(dests) else ""
def start(self):
return frozenset(self._expand(set([self.initial])))
def add_transition(self, src, label, dest):
self.transitions.setdefault(src, {}).setdefault(label, set()).add(dest)
def add_final_state(self, state):
self.final_states.add(state)
def triples(self):
for src, trans in iteritems(self.transitions):
for label, dests in iteritems(trans):
for dest in dests:
yield src, label, dest
def is_final(self, states):
return bool(self.final_states.intersection(states))
def _expand(self, states):
transitions = self.transitions
frontier = set(states)
while frontier:
state = frontier.pop()
if state in transitions and EPSILON in transitions[state]:
new_states = transitions[state][EPSILON].difference(states)
frontier.update(new_states)
states.update(new_states)
return states
def next_state(self, states, label):
transitions = self.transitions
dest_states = set()
for state in states:
if state in transitions:
xs = transitions[state]
if label in xs:
dest_states.update(xs[label])
if ANY in xs:
dest_states.update(xs[ANY])
return frozenset(self._expand(dest_states))
def get_labels(self, states):
transitions = self.transitions
labels = set()
for state in states:
if state in transitions:
labels.update(transitions[state])
return labels
def embed(self, other):
# Copy all transitions from the other NFA into this one
for s, othertrans in iteritems(other.transitions):
trans = self.transitions.setdefault(s, {})
for label, otherdests in iteritems(othertrans):
dests = trans.setdefault(label, set())
dests.update(otherdests)
def insert(self, src, other, dest):
self.embed(other)
# Connect src to the other NFA's initial state, and the other
# NFA's final states to dest
self.add_transition(src, EPSILON, other.initial)
for finalstate in other.final_states:
self.add_transition(finalstate, EPSILON, dest)
def to_dfa(self):
dfa = DFA(self.start())
frontier = [self.start()]
seen = set()
while frontier:
current = frontier.pop()
if self.is_final(current):
dfa.add_final_state(current)
labels = self.get_labels(current)
for label in labels:
if label is EPSILON:
continue
new_state = self.next_state(current, label)
if new_state not in seen:
frontier.append(new_state)
seen.add(new_state)
if self.is_final(new_state):
dfa.add_final_state(new_state)
if label is ANY:
dfa.set_default_transition(current, new_state)
else:
dfa.add_transition(current, label, new_state)
return dfa
class DFA(FSA):
def __init__(self, initial):
self.initial = initial
self.transitions = {}
self.defaults = {}
self.final_states = set()
self.outlabels = {}
def dump(self, stream=sys.stdout):
for src in sorted(self.transitions):
beg = "@" if src == self.initial else " "
print(beg, src, file=stream)
xs = self.transitions[src]
for label in sorted(xs):
dest = xs[label]
end = "||" if self.is_final(dest) else ""
def start(self):
return self.initial
def add_transition(self, src, label, dest):
self.transitions.setdefault(src, {})[label] = dest
def set_default_transition(self, src, dest):
self.defaults[src] = dest
def add_final_state(self, state):
self.final_states.add(state)
def is_final(self, state):
return state in self.final_states
def next_state(self, src, label):
trans = self.transitions.get(src, {})
return trans.get(label, self.defaults.get(src, None))
def next_valid_string(self, string, asbytes=False):
state = self.start()
stack = []
# Follow the DFA as far as possible
i = 0
for i, label in enumerate(string):
stack.append((string[:i], state, label))
state = self.next_state(state, label)
if not state:
break
else:
stack.append((string[:i + 1], state, None))
if self.is_final(state):
# Word is already valid
return string
# Perform a 'wall following' search for the lexicographically smallest
# accepting state.
while stack:
path, state, label = stack.pop()
label = self.find_next_edge(state, label, asbytes=asbytes)
if label:
path += label
state = self.next_state(state, label)
if self.is_final(state):
return path
stack.append((path, state, None))
return None
def find_next_edge(self, s, label, asbytes):
if label is None:
label = b"\x00" if asbytes else u'\0'
else:
label = (label + 1) if asbytes else unichr(ord(label) + 1)
trans = self.transitions.get(s, {})
if label in trans or s in self.defaults:
return label
try:
labels = self.outlabels[s]
except KeyError:
self.outlabels[s] = labels = sorted(trans)
pos = bisect_left(labels, label)
if pos < len(labels):
return labels[pos]
return None
def reachable_from(self, src, inclusive=True):
transitions = self.transitions
reached = set()
if inclusive:
reached.add(src)
stack = [src]
seen = set()
while stack:
src = stack.pop()
seen.add(src)
for _, dest in iteritems(transitions[src]):
reached.add(dest)
if dest not in seen:
stack.append(dest)
return reached
def minimize(self):
transitions = self.transitions
initial = self.initial
# Step 1: Delete unreachable states
reachable = self.reachable_from(initial)
for src in list(transitions):
if src not in reachable:
del transitions[src]
final_states = self.final_states.intersection(reachable)
labels = self.all_labels()
# Step 2: Partition the states into equivalence sets
changed = True
parts = [final_states, reachable - final_states]
while changed:
changed = False
for i in xrange(len(parts)):
part = parts[i]
changed_part = False
for label in labels:
next_part = None
new_part = set()
for state in part:
dest = transitions[state].get(label)
if dest is not None:
if next_part is None:
for p in parts:
if dest in p:
next_part = p
elif dest not in next_part:
new_part.add(state)
changed = True
changed_part = True
if changed_part:
old_part = part - new_part
parts.pop(i)
parts.append(old_part)
parts.append(new_part)
break
# Choose one state from each equivalence set and map all equivalent
# states to it
new_trans = {}
# Create mapping
mapping = {}
new_initial = None
for part in parts:
representative = part.pop()
if representative is initial:
new_initial = representative
mapping[representative] = representative
new_trans[representative] = {}
for state in part:
if state is initial:
new_initial = representative
mapping[state] = representative
assert new_initial is not None
# Apply mapping to existing transitions
new_finals = set(mapping[s] for s in final_states)
for state, d in iteritems(new_trans):
trans = transitions[state]
for label, dest in iteritems(trans):
d[label] = mapping[dest]
# Remove dead states - non-final states with no outgoing arcs except
# to themselves
non_final_srcs = [src for src in new_trans if src not in new_finals]
removing = set()
for src in non_final_srcs:
dests = set(new_trans[src].values())
dests.discard(src)
if not dests:
removing.add(src)
del new_trans[src]
# Delete transitions to removed dead states
for t in new_trans.values():
for label in list(t):
if t[label] in removing:
del t[label]
self.transitions = new_trans
self.initial = new_initial
self.final_states = new_finals
def to_dfa(self):
return self
# Useful functions
def renumber_dfa(dfa, base=0):
c = itertools.count(base)
mapping = {}
def remap(state):
if state in mapping:
newnum = mapping[state]
else:
newnum = next(c)
mapping[state] = newnum
return newnum
newdfa = DFA(remap(dfa.initial))
for src, trans in iteritems(dfa.transitions):
for label, dest in iteritems(trans):
newdfa.add_transition(remap(src), label, remap(dest))
for finalstate in dfa.final_states:
newdfa.add_final_state(remap(finalstate))
for src, dest in iteritems(dfa.defaults):
newdfa.set_default_transition(remap(src), remap(dest))
return newdfa
def u_to_utf8(dfa, base=0):
c = itertools.count(base)
transitions = dfa.transitions
for src, trans in iteritems(transitions):
trans = transitions[src]
for label, dest in list(iteritems(trans)):
if label is EPSILON:
continue
elif label is ANY:
raise Exception
else:
assert isinstance(label, text_type)
label8 = label.encode("utf8")
for i, byte in enumerate(label8):
if i < len(label8) - 1:
st = next(c)
dfa.add_transition(src, byte, st)
src = st
else:
dfa.add_transition(src, byte, dest)
del trans[label]
def find_all_matches(dfa, lookup_func, first=unull):
"""
Uses lookup_func to find all words within levenshtein distance k of word.
Args:
word: The word to look up
k: Maximum edit distance
lookup_func: A single argument function that returns the first word in the
database that is greater than or equal to the input argument.
Yields:
Every matching word within levenshtein distance k from the database.
"""
match = dfa.next_valid_string(first)
while match:
key = lookup_func(match)
if key is None:
return
if match == key:
yield match
key += unull
match = dfa.next_valid_string(key)
# Construction functions
def reverse_nfa(n):
s = object()
nfa = NFA(s)
for src, trans in iteritems(n.transitions):
for label, destset in iteritems(trans):
for dest in destset:
nfa.add_transition(dest, label, src)
for finalstate in n.final_states:
nfa.add_transition(s, EPSILON, finalstate)
nfa.add_final_state(n.initial)
return nfa
def product(dfa1, op, dfa2):
dfa1 = dfa1.to_dfa()
dfa2 = dfa2.to_dfa()
start = (dfa1.start(), dfa2.start())
dfa = DFA(start)
stack = [start]
while stack:
src = stack.pop()
state1, state2 = src
trans1 = set(dfa1.transitions[state1])
trans2 = set(dfa2.transitions[state2])
for label in trans1.intersection(trans2):
state1 = dfa1.next_state(state1, label)
state2 = dfa2.next_state(state2, label)
if op(state1 is not None, state2 is not None):
dest = (state1, state2)
dfa.add_transition(src, label, dest)
stack.append(dest)
if op(dfa1.is_final(state1), dfa2.is_final(state2)):
dfa.add_final_state(dest)
return dfa
def intersection(dfa1, dfa2):
return product(dfa1, operator.and_, dfa2)
def union(dfa1, dfa2):
return product(dfa1, operator.or_, dfa2)
def epsilon_nfa():
return basic_nfa(EPSILON)
def dot_nfa():
return basic_nfa(ANY)
def basic_nfa(label):
s = object()
e = object()
nfa = NFA(s)
nfa.add_transition(s, label, e)
nfa.add_final_state(e)
return nfa
def charset_nfa(labels):
s = object()
e = object()
nfa = NFA(s)
for label in labels:
nfa.add_transition(s, label, e)
nfa.add_final_state(e)
return nfa
def string_nfa(string):
s = object()
e = object()
nfa = NFA(s)
for label in string:
e = object()
nfa.add_transition(s, label, e)
s = e
nfa.add_final_state(e)
return nfa
def choice_nfa(n1, n2):
s = object()
e = object()
nfa = NFA(s)
# -> nfa1 -
# / \
# s e
# \ /
# -> nfa2 -
nfa.insert(s, n1, e)
nfa.insert(s, n2, e)
nfa.add_final_state(e)
return nfa
def concat_nfa(n1, n2):
s = object()
m = object()
e = object()
nfa = NFA(s)
nfa.insert(s, n1, m)
nfa.insert(m, n2, e)
nfa.add_final_state(e)
return nfa
def star_nfa(n):
s = object()
e = object()
nfa = NFA(s)
# -----<-----
# / \
# s ---> n ---> e
# \ /
# ----->-----
nfa.insert(s, n, e)
nfa.add_transition(s, EPSILON, e)
for finalstate in n.final_states:
nfa.add_transition(finalstate, EPSILON, s)
nfa.add_final_state(e)
return nfa
def plus_nfa(n):
return concat_nfa(n, star_nfa(n))
def optional_nfa(n):
return choice_nfa(n, epsilon_nfa())
# Daciuk Mihov DFA construction algorithm
class DMNode(object):
def __init__(self, n):
self.n = n
self.arcs = {}
self.final = False
def __repr__(self):
return "<%s, %r>" % (self.n, self.tuple())
def __hash__(self):
return hash(self.tuple())
def tuple(self):
arcs = tuple(sorted(iteritems(self.arcs)))
return arcs, self.final
def strings_dfa(strings):
dfa = DFA(0)
c = itertools.count(1)
last = ""
seen = {}
nodes = [DMNode(0)]
for string in strings:
if string <= last:
raise Exception("Strings must be in order")
if not string:
raise Exception("Can't add empty string")
# Find the common prefix with the previous string
i = 0
while i < len(last) and i < len(string) and last[i] == string[i]:
i += 1
prefixlen = i
# Freeze the transitions after the prefix, since they're not shared
add_suffix(dfa, nodes, last, prefixlen + 1, seen)
# Create new nodes for the substring after the prefix
for label in string[prefixlen:]:
node = DMNode(next(c))
# Create an arc from the previous node to this node
nodes[-1].arcs[label] = node.n
nodes.append(node)
# Mark the last node as an accept state
nodes[-1].final = True
last = string
if len(nodes) > 1:
add_suffix(dfa, nodes, last, 0, seen)
return dfa
def add_suffix(dfa, nodes, last, downto, seen):
while len(nodes) > downto:
node = nodes.pop()
tup = node.tuple()
# If a node just like this one (final/nonfinal, same arcs to same
# destinations) is already seen, replace with it
try:
this = seen[tup]
except KeyError:
this = node.n
if node.final:
dfa.add_final_state(this)
seen[tup] = this
else:
# If we replaced the node with an already seen one, fix the parent
# node's pointer to this
parent = nodes[-1]
inlabel = last[len(nodes) - 1]
parent.arcs[inlabel] = this
# Add the node's transitions to the DFA
for label, dest in iteritems(node.arcs):
dfa.add_transition(this, label, dest)