202 lines
8.3 KiB
Python
Executable File
202 lines
8.3 KiB
Python
Executable File
#!/usr/bin/env python3
|
|
# David Bekaert
|
|
import os
|
|
import glob
|
|
import argparse
|
|
from uncompressFile import uncompressfile
|
|
import shutil
|
|
|
|
def createParser():
|
|
'''
|
|
Create command line parser.
|
|
'''
|
|
|
|
parser = argparse.ArgumentParser(description='Prepare CSK raw processing (unzip/untar files, organize in date folders, generate script to unpack into isce formats).')
|
|
parser.add_argument('-i', '--input', dest='input', type=str, required=True,
|
|
help='directory with the raw data')
|
|
parser.add_argument('-rmfile', '--rmfile', dest='rmfile',action='store_true', default=False,
|
|
help='Optional: remove zip/tar/compressed files after unpacking into date structure (default is to keep in archive folder)')
|
|
parser.add_argument('-o', '--output', dest='output', type=str, required=False,
|
|
help='output directory where data needs to be unpacked into isce format (for script generation).')
|
|
parser.add_argument('-t', '--text_cmd', dest='text_cmd', type=str, default='source ~/.bash_profile;',
|
|
help='text command to be added to the beginning of each line of the run files. Default: source ~/.bash_profile;')
|
|
|
|
return parser
|
|
|
|
|
|
def cmdLineParse(iargs=None):
|
|
'''
|
|
Command line parser.
|
|
'''
|
|
|
|
parser = createParser()
|
|
return parser.parse_args(args = iargs)
|
|
|
|
def get_Date(CSKfolder):
|
|
|
|
# will search for different version of workreport to be compatible with ASf, WInSAR etc
|
|
CSKfile = glob.glob(os.path.join(CSKfolder,'CSK*.h5'))
|
|
# if nothing is found return a failure
|
|
if len(CSKfile) > 0:
|
|
CSKfile = os.path.basename(CSKfile[0])
|
|
parts = CSKfile.split('_')
|
|
if len(parts)>8:
|
|
if len(parts[8])>8:
|
|
acquisitionDate = parts[8]
|
|
acquisitionDate = acquisitionDate[0:8]
|
|
successflag = True
|
|
return successflag, acquisitionDate
|
|
|
|
# if it reached here it could not find the acqusiitionDate
|
|
successflag = False
|
|
acquisitionDate = 'FAIL'
|
|
return successflag, acquisitionDate
|
|
|
|
def main(iargs=None):
|
|
'''
|
|
The main driver.
|
|
'''
|
|
|
|
inps = cmdLineParse(iargs)
|
|
# parsing required inputs
|
|
inputDir = os.path.abspath(inps.input)
|
|
# parsing optional inputs
|
|
if inps.output:
|
|
outputDir = os.path.abspath(inps.output)
|
|
else:
|
|
outputDir = None
|
|
rmfile = inps.rmfile
|
|
|
|
# filename of the runfile
|
|
run_unPack = 'run_unPackCSK'
|
|
|
|
|
|
# loop over the different folder, CSK zip/tar files and unzip them, make the names consistent
|
|
CSK_extensions = (os.path.join(inputDir, 'EL*.zip'),os.path.join(inputDir, 'EL*.tar'),os.path.join(inputDir, 'EL*.gz'))
|
|
for CSK_extension in CSK_extensions:
|
|
CSK_filesfolders = glob.glob(CSK_extension)
|
|
for CSK_infilefolder in CSK_filesfolders:
|
|
## the path to the folder/zip
|
|
workdir = os.path.dirname(CSK_infilefolder)
|
|
|
|
## get the output name folder without any extensions
|
|
temp = os.path.basename(CSK_infilefolder)
|
|
# trim the extensions and keep only very first part
|
|
parts = temp.split(".")
|
|
parts = parts[0].split('-')
|
|
CSK_outfolder = parts[0]
|
|
# add the path back in
|
|
CSK_outfolder = os.path.join(workdir,CSK_outfolder)
|
|
|
|
# loop over two cases (either file or folder):
|
|
### this is a file, try to unzip/untar it
|
|
if os.path.isfile(CSK_infilefolder):
|
|
# unzip the file in the outfolder
|
|
successflag_unzip = uncompressfile(CSK_infilefolder,CSK_outfolder)
|
|
|
|
# put failed files in a seperate directory
|
|
if not successflag_unzip:
|
|
os.makedirs(os.path.join(workdir,'FAILED_FILES'), exist_ok=True)
|
|
os.rename(CSK_infilefolder,os.path.join(workdir,'FAILED_FILES','.'))
|
|
else:
|
|
# check if file needs to be removed or put in archive folder
|
|
if rmfile:
|
|
os.remove(CSK_infilefolder)
|
|
print('Deleting: ' + CSL_infilefolder)
|
|
else:
|
|
os.makedirs(os.path.join(workdir,'ARCHIVED_FILES'), exist_ok=True)
|
|
cmd = 'mv ' + CSK_infilefolder + ' ' + os.path.join(workdir,'ARCHIVED_FILES','.')
|
|
os.system(cmd)
|
|
|
|
# loop over the different CSK folders and make sure the folder names are consistent.
|
|
# this step is not needed unless the user has manually unzipped data before.
|
|
CSK_folders = glob.glob(os.path.join(inputDir, 'EL*'))
|
|
for CSK_folder in CSK_folders:
|
|
# in case the user has already unzipped some files, make sure they are unzipped similar like the uncompressfile code
|
|
temp = os.path.basename(CSK_folder)
|
|
parts = temp.split(".")
|
|
parts = parts[0].split('-')
|
|
CSK_outfolder_temp = parts[0]
|
|
CSK_outfolder_temp = os.path.join(os.path.dirname(CSK_folder),CSK_outfolder_temp)
|
|
# check if the folder (CSK_folder) has a different filename as generated from the uncompressFile code (CSK_outfolder_temp)
|
|
if not (CSK_outfolder_temp == CSK_folder):
|
|
# it is different, check if the CSK_outfolder_temp already exists, if yes, delete the current folder
|
|
if os.path.isdir(CSK_outfolder_temp):
|
|
print('Remove ' + CSK_folder + ' as ' + CSK_outfolder_temp + ' exists...')
|
|
# check if this folder already exist, if so overwrite it
|
|
shutil.rmtree(CSK_folder)
|
|
|
|
# loop over the different CSK folders and organize in date folders
|
|
CSK_folders = glob.glob(os.path.join(inputDir, 'EL*'))
|
|
for CSK_folder in CSK_folders:
|
|
# get the date
|
|
successflag, imgDate = get_Date(CSK_folder)
|
|
|
|
workdir = os.path.dirname(CSK_folder)
|
|
if successflag:
|
|
# move the file into the date folder
|
|
SLC_dir = os.path.join(workdir,imgDate,'')
|
|
os.makedirs(SLC_dir, exist_ok=True)
|
|
|
|
# check if the folder already exist in that case overwrite it
|
|
CSK_folder_out = os.path.join(SLC_dir,os.path.basename(CSK_folder))
|
|
if os.path.isdir(CSK_folder_out):
|
|
shutil.rmtree(CSK_folder_out)
|
|
|
|
### FOR NOW TO MAKE MERGING WORK OF MULTIPLE SCENES
|
|
### In future would be better to have a -m option for CSK unpack like ALOS unpack?
|
|
cmd = 'mv ' + CSK_folder + '/* ' + SLC_dir + '.'
|
|
os.system(cmd)
|
|
cmd = 'rmdir ' + CSK_folder
|
|
os.system(cmd)
|
|
###
|
|
###
|
|
|
|
# # move the CSK acqusition folder in the date folder
|
|
# cmd = 'mv ' + CSK_folder + ' ' + SLC_dir + '.'
|
|
# os.system(cmd)
|
|
|
|
|
|
|
|
|
|
print ('Succes: ' + imgDate)
|
|
else:
|
|
print('Failed: ' + CSK_folder)
|
|
|
|
|
|
# now generate the unpacking script for all the date dirs
|
|
dateDirs = glob.glob(os.path.join(inputDir,'2*'))
|
|
if outputDir is not None:
|
|
f = open(run_unPack,'w')
|
|
for dateDir in dateDirs:
|
|
CSKFiles = glob.glob(os.path.join(dateDir, 'CSK*.h5'))
|
|
if len(CSKFiles)>0:
|
|
acquisitionDate = os.path.basename(dateDir)
|
|
slcDir = os.path.join(outputDir, acquisitionDate)
|
|
os.makedirs(slcDir, exist_ok=True)
|
|
cmd = 'unpackFrame_CSK_raw.py -i ' + os.path.abspath(dateDir) + ' -o ' + slcDir
|
|
print (cmd)
|
|
f.write(inps.text_cmd + cmd+'\n')
|
|
|
|
"""
|
|
##### FOR now lets ptu all scences in single folder
|
|
CSKFiles = glob.glob(os.path.join(dateDir, 'EL*'))
|
|
if len(CSKFiles)>0:
|
|
acquisitionDate = os.path.basename(dateDir)
|
|
slcDir = os.path.join(outputDir, acquisitionDate)
|
|
os.makedirs(slcDir, exist_ok=True)
|
|
cmd = 'unpackFrame_CSK_raw.py -i ' + os.path.abspath(dateDir) + ' -o ' + slcDir
|
|
|
|
if len(CSKFiles) > 1:
|
|
cmd = cmd + ' -m'
|
|
print (cmd)
|
|
f.write(inps.text_cmd + cmd+'\n')
|
|
"""
|
|
f.close()
|
|
|
|
if __name__ == '__main__':
|
|
|
|
main()
|
|
|
|
|