207 lines
8.8 KiB
Python
Executable File
207 lines
8.8 KiB
Python
Executable File
#!/usr/bin/env python3
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# David Bekaert
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import os
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import glob
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import argparse
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from uncompressFile import uncompressfile
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import shutil
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def createParser():
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'''
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Create command line parser.
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'''
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parser = argparse.ArgumentParser(description='Prepare CSK raw processing (unzip/untar files, organize in date folders, generate script to unpack into isce formats).')
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parser.add_argument('-i', '--input', dest='input', type=str, required=True,
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help='directory with the raw data')
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parser.add_argument('-rmfile', '--rmfile', dest='rmfile',action='store_true', default=False,
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help='Optional: remove zip/tar/compressed files after unpacking into date structure (default is to keep in archive folder)')
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parser.add_argument('-o', '--output', dest='output', type=str, required=False,
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help='output directory where data needs to be unpacked into isce format (for script generation).')
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parser.add_argument('-t', '--text_cmd', dest='text_cmd', type=str, default='source ~/.bash_profile;',
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help='text command to be added to the beginning of each line of the run files. Default: source ~/.bash_profile;')
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return parser
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def cmdLineParse(iargs=None):
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'''
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Command line parser.
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'''
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parser = createParser()
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return parser.parse_args(args = iargs)
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def get_Date(CSKfolder):
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# will search for different version of workreport to be compatible with ASf, WInSAR etc
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CSKfile = glob.glob(os.path.join(CSKfolder,'CSK*.h5'))
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# if nothing is found return a failure
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if len(CSKfile) > 0:
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CSKfile = os.path.basename(CSKfile[0])
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parts = CSKfile.split('_')
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if len(parts)>8:
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if len(parts[8])>8:
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acquisitionDate = parts[8]
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acquisitionDate = acquisitionDate[0:8]
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successflag = True
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return successflag, acquisitionDate
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# if it reached here it could not find the acqusiitionDate
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successflag = False
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acquisitionDate = 'FAIL'
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return successflag, acquisitionDate
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def main(iargs=None):
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'''
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The main driver.
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'''
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inps = cmdLineParse(iargs)
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# parsing required inputs
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inputDir = os.path.abspath(inps.input)
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# parsing optional inputs
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if inps.output:
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outputDir = os.path.abspath(inps.output)
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else:
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outputDir = None
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rmfile = inps.rmfile
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# filename of the runfile
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run_unPack = 'run_unPackCSK'
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# loop over the different folder, CSK zip/tar files and unzip them, make the names consistent
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CSK_extensions = (os.path.join(inputDir, 'EL*.zip'),os.path.join(inputDir, 'EL*.tar'),os.path.join(inputDir, 'EL*.gz'))
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for CSK_extension in CSK_extensions:
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CSK_filesfolders = glob.glob(CSK_extension)
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for CSK_infilefolder in CSK_filesfolders:
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## the path to the folder/zip
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workdir = os.path.dirname(CSK_infilefolder)
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## get the output name folder without any extensions
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temp = os.path.basename(CSK_infilefolder)
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# trim the extensions and keep only very first part
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parts = temp.split(".")
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parts = parts[0].split('-')
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CSK_outfolder = parts[0]
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# add the path back in
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CSK_outfolder = os.path.join(workdir,CSK_outfolder)
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# loop over two cases (either file or folder):
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### this is a file, try to unzip/untar it
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if os.path.isfile(CSK_infilefolder):
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# unzip the file in the outfolder
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successflag_unzip = uncompressfile(CSK_infilefolder,CSK_outfolder)
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# put failed files in a seperate directory
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if not successflag_unzip:
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if not os.path.isdir(os.path.join(workdir,'FAILED_FILES')):
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os.makedirs(os.path.join(workdir,'FAILED_FILES'))
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os.rename(CSK_infilefolder,os.path.join(workdir,'FAILED_FILES','.'))
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else:
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# check if file needs to be removed or put in archive folder
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if rmfile:
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os.remove(CSK_infilefolder)
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print('Deleting: ' + CSL_infilefolder)
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else:
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if not os.path.isdir(os.path.join(workdir,'ARCHIVED_FILES')):
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os.makedirs(os.path.join(workdir,'ARCHIVED_FILES'))
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cmd = 'mv ' + CSK_infilefolder + ' ' + os.path.join(workdir,'ARCHIVED_FILES','.')
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os.system(cmd)
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# loop over the different CSK folders and make sure the folder names are consistent.
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# this step is not needed unless the user has manually unzipped data before.
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CSK_folders = glob.glob(os.path.join(inputDir, 'EL*'))
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for CSK_folder in CSK_folders:
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# in case the user has already unzipped some files, make sure they are unzipped similar like the uncompressfile code
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temp = os.path.basename(CSK_folder)
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parts = temp.split(".")
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parts = parts[0].split('-')
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CSK_outfolder_temp = parts[0]
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CSK_outfolder_temp = os.path.join(os.path.dirname(CSK_folder),CSK_outfolder_temp)
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# check if the folder (CSK_folder) has a different filename as generated from the uncompressFile code (CSK_outfolder_temp)
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if not (CSK_outfolder_temp == CSK_folder):
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# it is different, check if the CSK_outfolder_temp already exists, if yes, delete the current folder
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if os.path.isdir(CSK_outfolder_temp):
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print('Remove ' + CSK_folder + ' as ' + CSK_outfolder_temp + ' exists...')
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# check if this folder already exist, if so overwrite it
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shutil.rmtree(CSK_folder)
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# loop over the different CSK folders and organize in date folders
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CSK_folders = glob.glob(os.path.join(inputDir, 'EL*'))
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for CSK_folder in CSK_folders:
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# get the date
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successflag, imgDate = get_Date(CSK_folder)
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workdir = os.path.dirname(CSK_folder)
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if successflag:
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# move the file into the date folder
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SLC_dir = os.path.join(workdir,imgDate,'')
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if not os.path.isdir(SLC_dir):
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os.makedirs(SLC_dir)
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# check if the folder already exist in that case overwrite it
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CSK_folder_out = os.path.join(SLC_dir,os.path.basename(CSK_folder))
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if os.path.isdir(CSK_folder_out):
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shutil.rmtree(CSK_folder_out)
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### FOR NOW TO MAKE MERGING WORK OF MULTIPLE SCENES
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### In future would be better to have a -m option for CSK unpack like ALOS unpack?
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cmd = 'mv ' + CSK_folder + '/* ' + SLC_dir + '.'
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os.system(cmd)
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cmd = 'rmdir ' + CSK_folder
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os.system(cmd)
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###
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###
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# # move the CSK acqusition folder in the date folder
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# cmd = 'mv ' + CSK_folder + ' ' + SLC_dir + '.'
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# os.system(cmd)
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print ('Succes: ' + imgDate)
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else:
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print('Failed: ' + CSK_folder)
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# now generate the unpacking script for all the date dirs
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dateDirs = glob.glob(os.path.join(inputDir,'2*'))
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if outputDir is not None:
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f = open(run_unPack,'w')
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for dataDir in dateDirs:
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CSKFiles = glob.glob(os.path.join(dataDir, 'CSK*.h5'))
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if len(CSKFiles)>0:
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acquisitionDate = os.path.basename(dataDir)
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slcDir = os.path.join(outputDir, acquisitionDate)
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if not os.path.exists(slcDir):
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os.makedirs(slcDir)
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cmd = 'unpackFrame_CSK_raw.py -i ' + os.path.abspath(dataDir) + ' -o ' + slcDir
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print (cmd)
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f.write(inps.text_cmd + cmd+'\n')
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"""
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##### FOR now lets ptu all scences in single folder
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CSKFiles = glob.glob(os.path.join(dataDir, 'EL*'))
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if len(CSKFiles)>0:
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acquisitionDate = os.path.basename(dataDir)
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slcDir = os.path.join(outputDir, acquisitionDate)
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if not os.path.exists(slcDir):
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os.makedirs(slcDir)
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cmd = 'unpackFrame_CSK_raw.py -i ' + os.path.abspath(dataDir) + ' -o ' + slcDir
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if len(CSKFiles) > 1:
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cmd = cmd + ' -m'
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print (cmd)
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f.write(inps.text_cmd + cmd+'\n')
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"""
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f.close()
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if __name__ == '__main__':
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main()
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