#!/usr/bin/env python3 #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ # Copyright 2012 California Institute of Technology. ALL RIGHTS RESERVED. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # # United States Government Sponsorship acknowledged. This software is subject to # U.S. export control laws and regulations and has been classified as 'EAR99 NLR' # (No [Export] License Required except when exporting to an embargoed country, # end user, or in support of a prohibited end use). By downloading this software, # the user agrees to comply with all applicable U.S. export laws and regulations. # The user has the responsibility to obtain export licenses, or other export # authority as may be required before exporting this software to any 'EAR99' # embargoed foreign country or citizen of those countries. # # Author: Giangi Sacco #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #!/usr/bin/env python3 #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ # # Author: Giangi Sacco # Copyright 2012, 2015 by the California Institute of Technology. # ALL RIGHTS RESERVED. # United States Government Sponsorship acknowledged. Any commercial use must be # negotiated with the Office of Technology Transfer at the # California Institute of Technology. from iscesys.Component.Component import Component from isceobj.Image.Image import TO_NUMPY import numpy as np import os #Parameters definitions DTYPE = Component.Parameter('_dtype', public_name = 'dtype', default = '', type = str, mandatory = True, doc = 'Data type') OUTPUT_FILE = Component.Parameter('_outputFile', public_name='outputFile', default = '', type = str, mandatory = True, doc = 'Output file.') FILE_LIST = Component.Parameter('_fileList', public_name = 'fileList', default = '', type = str, mandatory = True, doc = 'Ordered list of the files to stitch. The order must be from top ' + \ 'top left to bottom right') TILE_SIZE = Component.Parameter('_tileSize', public_name = 'tileSize', default = [], container=list, type=int, mandatory = True, doc = 'Two element list with the number of row and columns of the tile.') OVERLAP = Component.Parameter('_overlap', public_name = 'overlap', default = [1,1], container=list, type=int, mandatory = False, doc = 'Number of overlapping pixels between two tiles along the rows and columns.') ARRANGEMENT = Component.Parameter('_arrangement', public_name = 'arrangement', default = [], container=list, type=int, mandatory = True, doc = 'Two element list with the number of tiles along ' +\ 'the vertical and the horizontal directions.') FILLING_VALUE = Component.Parameter('_fillingValue', public_name = 'fillingValue', default = 0, type=float, mandatory = True, doc = 'Value used for missing tiles.') ENDIAN = Component.Parameter('_endian', public_name = 'endian', default = '>', type = str, mandatory = False, doc = 'Data endianness. > big endian, < small endian') DIRECTORY = Component.Parameter('_directory', public_name='directory', default = './', type = str, mandatory = False, doc = "Location where the files to be stitched are") class Stitcher(Component): family = 'stitcher' parameter_list = (DTYPE, OUTPUT_FILE, FILE_LIST, TILE_SIZE, OVERLAP, ARRANGEMENT, FILLING_VALUE, ENDIAN, DIRECTORY ) @property def fillValue(self): return self._fillValue @fillValue.setter def fillValue(self,val): self._fillValue = val @property def dtype(self): return self._dtype @dtype.setter def dtype(self,val): self._dtype = val @property def outputFile(self): return self._outputFile @outputFile.setter def outputFile(self,val): self._outputFile = val @property def fileList(self): return self._fileList @fileList.setter def fileList(self,val): self._fileList = val @property def tileSize(self): return self._tileSize @tileSize.setter def tileSize(self,val): self._tileSize = val @property def overlap(self): return self._overlap @overlap.setter def overlap(self,val): self._overlap = val @property def arrangement(self): return self._arrangement @arrangement.setter def arrangement(self,val): self._arrangement = val @property def endian(self): return self._endian @endian.setter def endian(self,val): self._endian = val @property def directory(self): return self._directory @directory.setter def directory(self,val): self._directory = val def getDataType(self): ret = '' if self._dtype: ret = TO_NUMPY[self._dtype] return ret def stitch(self): dtype = self.getDataType() dr = self._tileSize[0] - self._overlap[0] dc = self._tileSize[0] - self._overlap[0] mmap = np.memmap(self._outputFile,dtype,'w+', shape=(self._arrangement[0]*dr, self._arrangement[1]*dc)) pos = 0 mmap[:] = self._fillingValue for i in range(self._arrangement[0]): for j in range(self._arrangement[1]): name = self._fileList[pos] #if the filename is _toSkipName the skip this data. #it will be filled with _fillingValue if not name == self._toSkipName: data = np.reshape(np.fromfile(os.path.join(self.directory,name),self._endian + dtype),self._tileSize) mmap[i*dr:(i+1)*dr,j*dc:(j+1)*dc] = data[:dr,:dc] pos += 1 def __init__(self,family = '', name = ''): super(Component, self).__init__(family if family else self.__class__.family, name=name) self._toSkipName = 'toSkip'