#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ # Copyright 2013 California Institute of Technology. ALL RIGHTS RESERVED. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # # United States Government Sponsorship acknowledged. This software is subject to # U.S. export control laws and regulations and has been classified as 'EAR99 NLR' # (No [Export] License Required except when exporting to an embargoed country, # end user, or in support of a prohibited end use). By downloading this software, # the user agrees to comply with all applicable U.S. export laws and regulations. # The user has the responsibility to obtain export licenses, or other export # authority as may be required before exporting this software to any 'EAR99' # embargoed foreign country or citizen of those countries. # # Author: Piyush Agram #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ from __future__ import print_function import os from . import snaphu from . import grass from . import icu from . import snaphu_mcf Unwrappers = {'SNAPHU' : snaphu.snaphu, 'GRASS' : grass.grass, 'ICU' : icu.icu, 'SNAPHU_MCF' : snaphu_mcf.snaphu_mcf} def createUnwrapper(unwrap, unwrapper_name, name=None): '''Implements the logic between unwrap and unwrapper_name to choose the unwrapping method.''' unwMethod = None # print('Unwrap = ', unwrap) # print('Unwrapper Name = ', unwrapper_name) #If no unwrapping name is provided. if (unwrapper_name is None) or (unwrapper_name is ''): #But unwrapped results are desired, set to default: grass if unwrap is True: unwMethod = 'grass' #Unwrap should be set to true. elif unwrap is True: unwMethod = unwrapper_name # print('Algorithm: ', unwMethod) if unwMethod is not None: try: cls = Unwrappers[str(unwMethod).upper()] print(cls.__module__) except AttributeError: raise TypeError("'unwrapper type'=%s cannot be interpreted"% str(unwMethod)) pass else: cls = None return cls