# This file describes how to set up ISCE and run
# the Faraday Rotation estimation code on moka.
#
# First, set up your environment to run ISCE
# Set the environment variables:

PATH=/home/isce/bin/:$PATH
export PYTHONPATH=/home/szeliga/isce/components
export LD_LIBRARY_PATH=/home/szeliga/lib64
export ISCE_HOME='/home/szeliga/isce'

# Then, in the directory in which you would like to process data, 
# create the following input files for the Faraday Rotation script

# In a file named FR.xml, place
<component>
 <property>
  <name>HH</name>
  <factoryname>createALOS</factoryname>
  <factorymodule>isceobj.Sensor</factorymodule>
  <value>HH.xml</value>
 </property>
 <property>
  <name>HV</name>
  <factoryname>createALOS</factoryname>
  <factorymodule>isceobj.Sensor</factorymodule>
  <value>HV.xml</value>
 </property>
 <property>
  <name>VH</name>
  <factoryname>createALOS</factoryname>
  <factorymodule>isceobj.Sensor</factorymodule>
  <value>VH.xml</value>
 </property>
 <property>
  <name>VV</name>
  <factoryname>createALOS</factoryname>
  <factorymodule>isceobj.Sensor</factorymodule>
  <value>VV.xml</value>
 </property>
</component>

# In a file names HH.xml, place
<component>
 <property>
  <name>LEADERFILE</name>
  <value>/u/moka4/issi/szeliga/data/aurora/frame240/LED-ALPSRP063051240-P1.1__A</value>
 </property>
 <property>
  <name>IMAGEFILE</name>
  <value>/u/moka4/issi/szeliga/data/aurora/frame240/IMG-HH-ALPSRP063051240-P1.1__A</value>
 </property>
</component>

# In a file names HV.xml, place
<component>
 <property>
  <name>LEADERFILE</name>
  <value>/u/moka4/issi/szeliga/data/aurora/frame240/LED-ALPSRP063051240-P1.1__A</value>
 </property>
 <property>
  <name>IMAGEFILE</name>
  <value>/u/moka4/issi/szeliga/data/aurora/frame240/IMG-HV-ALPSRP063051240-P1.1__A</value>
 </property>
</component>

# In a file names VH.xml, place
<component>
 <property>
  <name>LEADERFILE</name>
  <value>/u/moka4/issi/szeliga/data/aurora/frame240/LED-ALPSRP063051240-P1.1__A</value>
 </property>
 <property>
  <name>IMAGEFILE</name>
  <value>/u/moka4/issi/szeliga/data/aurora/frame240/IMG-VH-ALPSRP063051240-P1.1__A</value>
 </property>
</component>

# In a file names VV.xml, place
<component>
 <property>
  <name>LEADERFILE</name>
  <value>/u/moka4/issi/szeliga/data/aurora/frame240/LED-ALPSRP063051240-P1.1__A</value>
 </property>
 <property>
  <name>IMAGEFILE</name>
  <value>/u/moka4/issi/szeliga/data/aurora/frame240/IMG-VV-ALPSRP063051240-P1.1__A</value>
 </property>
</component>

# In a file names output.xml, place
<component>
 <property>
  <name>FILTER</name>
  <value>Mean</value>
 </property>
 <property>
  <name>FILTER_SIZE_X</name>
  <value>21</value>
 </property>
 <property>
  <name>FILTER_SIZE_Y</name>
  <value>11</value>
 </property>
 <property>
  <name>TEC</name>
  <value>tec.slc</value>
 </property>
 <property>
  <name>FARADAY_ROTATION</name>
  <value>fr.slc</value>
 </property>
 <property>
  <name>PHASE</name>
  <value>phase.slc</value>
 </property>
</component>

# From your processing directory, run the following command

$ISCE_HOME/applications/ISSI.py FR.xml output.xml