#!/usr/bin/env python3 # # Author: Cunren Liang # Copyright 2015-present, NASA-JPL/Caltech # import os import glob import shutil import datetime import numpy as np import xml.etree.ElementTree as ET import isce, isceobj from isceobj.Alos2Proc.Alos2ProcPublic import runCmd def cmdLineParse(): ''' command line parser. ''' import sys import argparse parser = argparse.ArgumentParser(description='check ionospheric correction results') parser.add_argument('-idir', dest='idir', type=str, required=True, help = 'input directory where each pair (YYMMDD-YYMMDD) is located. only folders are recognized') parser.add_argument('-odir', dest='odir', type=str, required=True, help = 'output directory for estimated ionospheric phase of each date') parser.add_argument('-pairs', dest='pairs', type=str, nargs='+', default=None, help = 'a number of pairs seperated by blanks. format: YYMMDD-YYMMDD YYMMDD-YYMMDD YYMMDD-YYMMDD... This argument has highest priority. When provided, only process these pairs') parser.add_argument('-wbd_msk', dest='wbd_msk', action='store_true', help='apply water body mask in the output image') # parser.add_argument('-nrlks', dest='nrlks', type=int, default=1, # help = 'number of range looks 1 * number of range looks ion. default: 1') # parser.add_argument('-nalks', dest='nalks', type=int, default=1, # help = 'number of azimuth looks 1 * number of azimuth looks ion. default: 1') if len(sys.argv) <= 1: print('') parser.print_help() sys.exit(1) else: return parser.parse_args() if __name__ == '__main__': inps = cmdLineParse() #get user parameters from input idir = inps.idir odir = inps.odir pairsUser = inps.pairs wbdMsk = inps.wbd_msk ####################################################### if shutil.which('montage') is None: raise Exception('this command requires montage in ImageMagick\n') #get date folders dateDirs = sorted(glob.glob(os.path.join(os.path.abspath(idir), '*'))) dateDirs = [os.path.basename(x) for x in dateDirs if os.path.isdir(x)] if pairsUser is not None: pairs = pairsUser else: pairs = dateDirs os.makedirs(odir, exist_ok=True) img = isceobj.createImage() img.load(glob.glob(os.path.join(idir, pairs[0], 'ion', 'ion_cal', 'filt_ion_*rlks_*alks.ion'))[0] + '.xml') width = img.width length = img.length widthMax = 600 if width >= widthMax: ratio = widthMax / width resize = ' -resize {}%'.format(ratio*100.0) else: ratio = 1.0 resize = '' for ipair in pairs: diffOriginal = glob.glob(os.path.join(idir, ipair, 'ion', 'ion_cal', 'diff_{}_*rlks_*alks_ori.int'.format(ipair)))[0] ion = glob.glob(os.path.join(idir, ipair, 'ion', 'ion_cal', 'filt_ion_*rlks_*alks.ion'))[0] diff = glob.glob(os.path.join(idir, ipair, 'ion', 'ion_cal', 'diff_{}_*rlks_*alks.int'.format(ipair)))[0] if wbdMsk: wbd = glob.glob(os.path.join(idir, ipair, 'ion', 'ion_cal', 'wbd_*rlks_*alks.wbd'))[0] wbdArguments = ' {} -s {} -i1 -cmap grey -percent 100'.format(wbd, width) else: wbdArguments = '' runCmd('mdx {} -s {} -c8pha -cmap cmy -wrap 6.283185307179586 -addr -3.141592653589793{} -P -workdir {}'.format(diffOriginal, width, wbdArguments, odir)) runCmd('mv {} {}'.format(os.path.join(odir, 'out.ppm'), os.path.join(odir, 'out1.ppm'))) runCmd('mdx {} -s {} -cmap cmy -wrap 6.283185307179586 -addr -3.141592653589793{} -P -workdir {}'.format(ion, width, wbdArguments, odir)) runCmd('mv {} {}'.format(os.path.join(odir, 'out.ppm'), os.path.join(odir, 'out2.ppm'))) runCmd('mdx {} -s {} -c8pha -cmap cmy -wrap 6.283185307179586 -addr -3.141592653589793{} -P -workdir {}'.format(diff, width, wbdArguments, odir)) runCmd('mv {} {}'.format(os.path.join(odir, 'out.ppm'), os.path.join(odir, 'out3.ppm'))) runCmd("montage -pointsize {} -label 'original' {} -label 'ionosphere' {} -label 'corrected' {} -geometry +{} -compress LZW{} {}.tif".format( int((ratio*width)/111*18+0.5), os.path.join(odir, 'out1.ppm'), os.path.join(odir, 'out2.ppm'), os.path.join(odir, 'out3.ppm'), int((ratio*width)/111*5+0.5), resize, os.path.join(odir, ipair))) runCmd('rm {} {} {}'.format( os.path.join(odir, 'out1.ppm'), os.path.join(odir, 'out2.ppm'), os.path.join(odir, 'out3.ppm'))) #create colorbar width_colorbar = 100 length_colorbar = 20 colorbar = np.ones((length_colorbar, width_colorbar), dtype=np.float32) * \ (np.linspace(-np.pi, np.pi, num=width_colorbar,endpoint=True,dtype=np.float32))[None,:] colorbar.astype(np.float32).tofile(os.path.join(odir, 'colorbar')) runCmd('mdx {} -s {} -cmap cmy -wrap 6.283185307179586 -addr -3.141592653589793 -P -workdir {}'.format(os.path.join(odir, 'colorbar'), width_colorbar, odir)) runCmd('convert {} -compress LZW -resize 100% {}'.format(os.path.join(odir, 'out.ppm'), os.path.join(odir, 'colorbar_-pi_pi.tiff'))) runCmd('rm {} {}'.format( os.path.join(odir, 'colorbar'), os.path.join(odir, 'out.ppm')))