After running the currently modified fetchOrbits.py, I've found out that the downloaded precise orbits were based on the date that they were processed instead of the date that they can be used. I've also modified the code to prevent downloading of restituted orbit if the precise orbit is available.
Pls. check if the changes I've made applies the orbit files to the Sentinel-1 SLC images properly.
* stackStripMap.py: change numbering style to match with topsStack
* Stack.py: separate parallel processors in topo.py from runfiles
* stackSentinel.py: add a new argument for parallel processors in topo.py
* Stack.py: remove extra num_process for unpackStackReferenceSLC
* stackSentinel.py: tie numProcess4topo to numProcessif the first not specified
* stackSentinel.py:using geopandas to calculate intersection between bbox and SAFE file coverage region
* stackSentinel.py:using geopandas and shapely package to calculate whether there are intersections between bbox and sentinel SAFE file. And remove import geopandas and shapely part into generate_geopolygon function
* stackSentinel.py: using shapely package to check whether bbox intersect with SAFE file coverage
* stackSentinel.py: using shapely package to check whether bbox intersect with SAFE file coverage
* stackSentinel.py:using shapely package to find whether bbox intersects with SAFE file
* stackSentinel.py:remove matplotlib DEBUG message#L14-L18
* added option to pass segment number through unpackFrame_UAVSAR
* changed type of segment number
* changed segment type in prepareUAVSAR_coregstack
* Revert "changed type of segment number"
This reverts commit a18c6452d4b5c95ce869dab2ee1e3bcf6ff2b1d9.
* Revert "changed segment type in prepareUAVSAR_coregstack"
This reverts commit 6cf3ebadb3a6e119c6084c8e03b8cc68d7eccc3f.
* changed type of segment number in unpackFrame_UAVSAR
* Added code to stripmapStack/topo.py to explicitly create the `geom_reference/hgt.rdr.vrt` file to work with newer GDAL
* ImageLib: fix str syntax
* stackSentl: rename slc workflow merge for consistency
rename the mergeSLC step in "slc" workflow, to be consistent with the other workflows.
* topsStack: check inconsistent num of bursts in secondary images
+ extractCommonValidRegion.py: add dropSecondarysWithDifferentNumberOfBursts() to discard those acquisitions during the common region calculation
+ mergeBursts.py: skip secondarys with inconsistent num of bursts by raise exception and exit
+ s1a_isce_utils.adjustValidSampleLine_V2(): remove a redundant line
Co-authored-by: Zhang Yunjun <yunjunz@users.noreply.github.com>
* stackSentl.createParser(): align break line
+ align linebreak of help msg
+ use choices=[] for auto argument checking
+ use (default: %(default)s) to show defult value
* stackSent: bugfix for new paris if ref date is close to recent
This commit fixs the missing pair between the reference date and the new acquisitions, if the reference date is the most recent "num_conn" acquisition.
* Stack: check existing orbit with glob instead of os.path.exist(dir)
* topsStack: add --num-proc for topo step
stackSentinel: add --num-proc to pass the number of parallel processes to topo.py, so that mp.Pool() can be independent of OMP_NUM_THREADS
Co-authored-by: Zhang Yunjun <yunjunz@users.noreply.github.com>
* added option to pass segment number through unpackFrame_UAVSAR
* changed type of segment number
* changed segment type in prepareUAVSAR_coregstack
* Revert "changed type of segment number"
This reverts commit a18c6452d4b5c95ce869dab2ee1e3bcf6ff2b1d9.
* Revert "changed segment type in prepareUAVSAR_coregstack"
This reverts commit 6cf3ebadb3a6e119c6084c8e03b8cc68d7eccc3f.
* changed type of segment number in unpackFrame_UAVSAR
+ update os.system() call of gdal2isce_xml.py with the python function call, in stripmapStack/topo.py and applications/downsampleDEM.py
+ break the long lines in downsampleDEM.py for easy reading
topsStack/FilterAndCoherence.py:
+ add .full suffix to the complex coherence filename only if the multilook number is 1
+ for multilook number as 1, do not run looks sub-module
topsStack/Stack.filter_coherence(): add .full suffix only when azLooks * rgLooks == 1
topsStack/mergeBursts.py: add python3 at the top of script
Otherwise, if 'stack' folder exists but is empty, the script will return ERROR as below:
```
/net/kraken/nobak/zyunjun/TonopahSenAT64/stack already exists.
Replacing master with existing stack.
updating the valid overlap region of:
/net/kraken/nobak/zyunjun/TonopahSenAT64/stack
******************
swath: 1
Traceback (most recent call last):
File "/home/zyunjun/tools/isce2/contrib/stack/topsStack/extractCommonValidRegion.py", line 109, in <module>
main()
File "/home/zyunjun/tools/isce2/contrib/stack/topsStack/extractCommonValidRegion.py", line 95, in main
topMaster = ut.loadProduct(os.path.join(inps.master , 'IW{0}.xml'.format(swath)))
File "/home/zyunjun/tools/isce2/contrib/stack/topsStack/s1a_isce_utils.py", line 26, in loadProduct
obj = pm.loadProduct(xmlname)
File "/net/kraken/home1/geomod/apps/rhel7/isce2-github/isce/components/iscesys/Component/ProductManager.py", line 25, in loadProduct
self.load(filename)
File "/net/kraken/home1/geomod/apps/rhel7/isce2-github/isce/components/iscesys/Component/Configurable.py", line 1407, in load
tmpProp, tmpFact, tmpMisc = FP.parse(filename)
File "/net/kraken/home1/geomod/apps/rhel7/isce2-github/isce/components/iscesys/Parsers/XmlParser.py", line 41, in parse
root = ET.parse(filename)
File "/net/kraken/home1/geomod/apps/anaconda3/lib/python3.7/xml/etree/ElementTree.py", line 1197, in parse
tree.parse(source, parser)
File "/net/kraken/home1/geomod/apps/anaconda3/lib/python3.7/xml/etree/ElementTree.py", line 587, in parse
source = open(source, "rb")
FileNotFoundError: [Errno 2] No such file or directory: '/net/kraken/nobak/zyunjun/TonopahSenAT64/stack/IW1.xml'
```
contrib/PyCuAmpcor/cuDenseOffsets.py:
+ expose --raw-over-samp-factor option to change the raw data oversampling factor with default of 2
+ expose --corr-win-size option, which by default, is calculated automatically based on the search window size and raw oversampling factor
+ change the namespace key for the oversampling factor of correlation surface from 'oversample' to 'corr_oversample' to avoid ambiguity, the cmd option name is still the same, thus no different in the user side.
+ use vrt file for master / slave slc data loading folllowing https://github.com/isce-framework/isce2/pull/78
+ re-organize createParse() for readability
+ add example to argparse help
stripmapStack/MaskAndFilter.py:
+ fix a bug introduced in #https://github.com/isce-framework/isce2/pull/112
+ add example usage to help message
+ mask pixels with SNR == 0, for plotting only without touching data files
+ show input parameter in the figure title
+ show percentage after SNR thresholding
+ add interpolation for matplotlib while plotting
topsStack/grossOffsets: move obsolete basemap import from the top to the related commented code block
related with https://github.com/isce-framework/isce2/pull/97
+ move cpx cohe calculation code from main() to estCpxCoherence()
+ move computeCoherence import from the top to the inside of estCpxCoherence(), to avoid import error/warning sometimes.
+ fix typo in the default value of --cc option from 'fine.cori.full' to 'fine.cor.full'
+ FilterAndCoherence: skip filtering if input filter strength <= 0 and use original phase for coherence estimation
+ Stack: do not add filt_ prefix to output file if input filter strength <= 0
Bryan Marfito
Sara Mirzaee
Sara Mirzaee
CunrenLiang
Ryan Burns
Lijun Zhu
Russell Grew
Ryan Burns
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Minyan Zhong
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Eric Fielding
Zhang Yunjun
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Zhang Yunjun
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