Commit Graph

126 Commits (b13d06aa3b981119d32c9da7dd1bb244622bed1e)

Author SHA1 Message Date
Ryan Burns b1c8a599ca Add cmake scripts for autoRIFT 2020-07-21 18:04:16 -07:00
Ryan Burns 48b6bfbccb Bake in autoRIFT 2020-07-21 14:52:28 -07:00
Gerald Manipon f09213eb33
various updates from ARIA-related projects (#149)
* add Dockerfile and SConfigISCE to build cuda-enabled modules

* add Dockerfile and SConfigISCE to build cuda-enabled modules

* set correct name

* update for centos7 and cuda-dev image

* restore

* disable GPUampcor

* update

* save

* sync up Dockerfile updates

* fix base image

* change docker image names

* create gpu vs. cpu specific tags

* update with nodata WBD Stitcher

* fix segmentation fault when running sciflo workflows

- remove dependencies that downgrade the `geos` conda package

* sync fix for segmentation fault to cuda builds

* ping ffi to version 1.12.2

Latest version of ffi, 1.13.0, breaks installation of fpm:
```
$ sudo gem install --no-ri --no-rdoc fpm
Fetching: cabin-0.9.0.gem (100%)
Successfully installed cabin-0.9.0
Fetching: backports-3.17.2.gem (100%)
Successfully installed backports-3.17.2
Fetching: arr-pm-0.0.10.gem (100%)
Successfully installed arr-pm-0.0.10
Fetching: clamp-1.0.1.gem (100%)
Successfully installed clamp-1.0.1
Fetching: ffi-1.13.0.gem (100%)
ERROR:  Error installing fpm:
        ffi requires Ruby version >= 2.3.
```
TODO: remove pin when ffi's backwards compatiblity is restored.

* comment out unused import

* add build circleci job to PR tests

* pin ffi in cuda build

* revert logging hackery

* fix "target_include_directories called with non-compilable target type" errors

* Keep source directory for topsStack

Co-authored-by: dustinlo <dustin.k.lo@jpl.nasa.gov>
Co-authored-by: shitong01 <stchin@ntu.edu.sg>
Co-authored-by: Ryan Burns <47790121+rtburns-jpl@users.noreply.github.com>
2020-07-16 16:08:57 -07:00
Ryan Burns 1f947b4e42
Merge pull request #156 from piyushrpt/cmake
Fixing linking order and flags for mdx
2020-07-15 22:06:10 -07:00
piyushrpt 4449e78b79 fixing linking order and flags for mdx
Not using interfaces for motif
2020-07-15 21:43:12 -07:00
Heresh Fattahi eb3eff61a6
Merge branch 'master' into BLM 2020-07-02 15:03:10 -07:00
Paul A Rosen e03042f4e5 diversity: replaced oppressive language with neutral definitions of the images that comprise an interferogram through the entire repository 2020-07-02 12:40:49 -07:00
Zhang Yunjun c642ab2e9a cuDenseOffset: check across oversample win size 2020-06-28 19:24:09 -07:00
Zhang Yunjun 90d578fa5d cuDenseOffsets: expose --raw-osf and --corr-win-size option
contrib/PyCuAmpcor/cuDenseOffsets.py:
+ expose --raw-over-samp-factor option to change the raw data oversampling factor with default of 2
+ expose --corr-win-size option, which by default, is calculated automatically based on the search window size and raw oversampling factor
+ change the namespace key for the oversampling factor of correlation surface from 'oversample' to 'corr_oversample' to avoid ambiguity, the cmd option name is still the same, thus no different in the user side.
+ use vrt file for master / slave slc data loading folllowing https://github.com/isce-framework/isce2/pull/78
+ re-organize createParse() for readability
+ add example to argparse help

stripmapStack/MaskAndFilter.py:
+ fix a bug introduced in #https://github.com/isce-framework/isce2/pull/112
+ add example usage to help message
+ mask pixels with SNR == 0, for plotting only without touching data files
+ show input parameter in the figure title
+ show percentage after SNR thresholding
+ add interpolation for matplotlib while plotting

topsStack/grossOffsets: move obsolete basemap import from the top to the related commented code block
2020-06-28 19:24:09 -07:00
Ryan Burns a66dcfdb1b Merge branch 'master' into cmake 2020-06-12 18:36:55 -07:00
Ryan Burns ed25d657fa Update pycuampcor prereqs 2020-06-12 17:53:40 -07:00
Cheryl edea69d4b6 added buffer margin to orbit times in get_orbit 2020-06-11 23:33:37 -07:00
shitong01 0fb49e383e fix syntax 2020-06-11 23:33:37 -07:00
shitong01 bb03d8c652 changed made by @cheryltwj to fix orbit file download edge case 2020-06-11 23:33:37 -07:00
sssangha acf0bbb55c Negative valid samples/lines now set to 0 2020-06-06 20:44:00 -07:00
Ryan Burns b12fde65d8 Add PyCuAmpcor support 2020-05-28 18:02:17 -07:00
Ryan Burns 1ad638b1de Install watermask and upsampledem modules 2020-05-22 15:49:10 -07:00
Ryan Burns f3fa2b0c6f Fix ISSI libname and data installation 2020-05-22 15:49:10 -07:00
Zhang Yunjun 35a80f0a5f bugfix in stripmapStack/Stack for config unwIfg if filter is turned off
If filter is turned OFF while unwrapping is still ON, the phase unwrapping output filename should not include "filt_" prefix.
2020-05-17 14:58:39 -07:00
yunjunz af5a8540f9 bugfix in topsStack/Stack while writing config_unwrap for rmFilter option
stackSentinel: more msg in checkCurrentStatus()
2020-05-17 14:58:39 -07:00
Zhang Yunjun 659a7ed6b0 stackSentinel: use 2 digit number in run_files to better sort 10 or more steps
update topsStack/README.md accordingly.

stackSentinel: suppress matplotlib DEBUG msg

stackSentinel: remove the unused imp import
2020-05-17 14:58:39 -07:00
Zhang Yunjun 0f60e9f24c FilterAndCoh: move cpx coh calc into a func
related with https://github.com/isce-framework/isce2/pull/97

+ move cpx cohe calculation code from main() to estCpxCoherence()
+ move computeCoherence import from the top to the inside of estCpxCoherence(), to avoid import error/warning sometimes.
+ fix typo in the default value of --cc option from 'fine.cori.full' to 'fine.cor.full'
2020-05-17 14:58:39 -07:00
Ryan Burns e68db01bf9
Merge pull request #89 from rtburns-jpl/cmake
Add CMake build system
2020-05-08 12:42:01 -07:00
Zhang Yunjun 4282bb8e0a prepSlcALOS2: add --polarization to pass to unpackFrame* 2020-05-03 14:12:24 -07:00
Zhang Yunjun 6a78c4e6d6 skip filtering if --filter_strength <= 0
+ FilterAndCoherence: skip filtering if input filter strength <= 0 and use original phase for coherence estimation

+ Stack: do not add filt_ prefix to output file if input filter strength <= 0
2020-05-03 14:12:24 -07:00
Zhang Yunjun d494ae3924 Stack: adjust indentation 2020-05-03 14:12:24 -07:00
Zhang Yunjun 34fb0b66fa Stack: skip PU if input method is "no" 2020-05-03 14:12:24 -07:00
Zhang Yunjun d41ffb0ce9 stackStripMap: suppress matplotlib DEBUG msg 2020-05-03 14:12:24 -07:00
Heresh Fattahi c9dd735a7b
Merge pull request #125 from yunjunz/topo
stripmapStack/topo: call gdal2isce_xml.py inside runMultilook() if xml file missing
2020-05-03 09:22:50 -07:00
Ryan Burns 4863c238e8 Merge branch 'master' into cmake 2020-05-02 16:40:26 -07:00
Minyan Zhong 4f0a2f551c add a gpu ampcor driver 2020-05-02 15:52:31 -07:00
Ryan Burns 9f3ed02c89 Add fftwf to alos2filter libs 2020-05-02 13:05:12 -07:00
Ryan Burns 7cf564582a Merge branch 'master' into cmake 2020-05-02 12:32:20 -07:00
CunrenLiang 62e8abe85b fix the problem in downloading NASA DEM 2020-05-02 12:11:54 -07:00
Zhang Yunjun 8017039ecb topo: replace gdal_translate cmd call with gda.Translate()
+ add more print out message
2020-05-02 11:54:17 -07:00
Zhang Yunjun 08dfd9de21 topo: call gdal2isce_xml.py inside runMultilook() if xml file missing
+ topo: merge runMultilookGdal() into runMultilook() with new argument "method" to control to use isce Looks module (averaging) or gdal_translate (extraction; default, same as before).

+ topo: call gdal2isce_xml.py so that xml file for multilooked data are always generate. This fix the warning message from gdal_translate: "Warning 1: Geotransform matrix has non rotational terms"

+ topo: skip multilooking if the data file has vrt/xml file missing, which sometimes happens to incLocal and shadowMask (don't know the cause yet; I used GPU version).

+ crossmul/resampleSlc: re-organize module import at the top of scripts
2020-05-02 10:26:29 -07:00
Heresh Fattahi 9e7e090548
Merge pull request #113 from mirzaees/stack_runfiles
Stack runfiles
2020-05-02 10:13:25 -07:00
Sara Mirzaee a24f0e99bf Merge branch 'stack_runfiles' of https://github.com/mirzaees/isce2 into stack_runfiles 2020-05-01 14:53:51 -05:00
Sara Mirzaee 08e3849945 looping over lines instead of reading the whole file 2020-05-01 14:45:48 -05:00
Sara Mirzaee fe097c906a add --rmFilter to stackSentinel.py 2020-05-01 14:44:59 -05:00
CunrenLiang 9794a75f55 use FFTW to speed up filtering 2020-04-26 19:18:33 -07:00
sssangha e96a110221 Download of nasadem now supported in dem.py 2020-04-20 18:24:12 -07:00
sssangha be959c3b27 Download of nasadem now supported in dem.py 2020-04-20 18:24:12 -07:00
Ryan Burns 81b54197e6 Merge branch 'master' into cmake 2020-04-13 14:34:14 -07:00
Ryan Burns 23f2ffaa1e
Use exist_ok argument to makedirs when appropriate (#112)
@falkamelung noted a race condition in #106 due to non-atomic directory
checking followed by os.makedirs. This pattern exists in many places
in the codebase so I went ahead and replaced the rest of them.
The new exist_ok usage should be terser and more idiomatic.
2020-04-13 12:40:32 -07:00
Sara Mirzaee e1729de5a8
fix bug: some lines were commented by mistake 2020-04-11 11:50:10 -04:00
Lijun Zhu 4cc13950a8 PyCuAmpcor: add gdal lib to link 2020-04-09 21:01:00 -07:00
Lijun Zhu 62a10d4c0d topsStack/cuDenseOffsets: call (included not standalone) PyCuAmpcor properly 2020-04-09 21:01:00 -07:00
Lijun Zhu 0855bf2640 DenseOffsets with PyCuAmpcor: use '.slc.vrt' instead of '.slc' as inputs 2020-04-09 21:01:00 -07:00
Lijun Zhu 434a71322f PyCuAmpcor: fixed #include gdal headers 2020-04-09 21:01:00 -07:00