Commit Graph

390 Commits (9d9bfa0a7273667930ff77750b9818252b611155)

Author SHA1 Message Date
Ryan Burns 9d9bfa0a72
Update name of main branch in CI and docs (#161)
The name of the main branch is now "main".
Documentation and CI scripts are updated accordingly.

Co-authored-by: Ryan Burns <rtburns-jpl@users.noreply.github.com>
2020-07-17 09:10:33 -07:00
Gerald Manipon f09213eb33
various updates from ARIA-related projects (#149)
* add Dockerfile and SConfigISCE to build cuda-enabled modules

* add Dockerfile and SConfigISCE to build cuda-enabled modules

* set correct name

* update for centos7 and cuda-dev image

* restore

* disable GPUampcor

* update

* save

* sync up Dockerfile updates

* fix base image

* change docker image names

* create gpu vs. cpu specific tags

* update with nodata WBD Stitcher

* fix segmentation fault when running sciflo workflows

- remove dependencies that downgrade the `geos` conda package

* sync fix for segmentation fault to cuda builds

* ping ffi to version 1.12.2

Latest version of ffi, 1.13.0, breaks installation of fpm:
```
$ sudo gem install --no-ri --no-rdoc fpm
Fetching: cabin-0.9.0.gem (100%)
Successfully installed cabin-0.9.0
Fetching: backports-3.17.2.gem (100%)
Successfully installed backports-3.17.2
Fetching: arr-pm-0.0.10.gem (100%)
Successfully installed arr-pm-0.0.10
Fetching: clamp-1.0.1.gem (100%)
Successfully installed clamp-1.0.1
Fetching: ffi-1.13.0.gem (100%)
ERROR:  Error installing fpm:
        ffi requires Ruby version >= 2.3.
```
TODO: remove pin when ffi's backwards compatiblity is restored.

* comment out unused import

* add build circleci job to PR tests

* pin ffi in cuda build

* revert logging hackery

* fix "target_include_directories called with non-compilable target type" errors

* Keep source directory for topsStack

Co-authored-by: dustinlo <dustin.k.lo@jpl.nasa.gov>
Co-authored-by: shitong01 <stchin@ntu.edu.sg>
Co-authored-by: Ryan Burns <47790121+rtburns-jpl@users.noreply.github.com>
2020-07-16 16:08:57 -07:00
Ryan Burns 1f947b4e42
Merge pull request #156 from piyushrpt/cmake
Fixing linking order and flags for mdx
2020-07-15 22:06:10 -07:00
piyushrpt 4449e78b79 fixing linking order and flags for mdx
Not using interfaces for motif
2020-07-15 21:43:12 -07:00
Heresh Fattahi bed6895391
Merge pull request #154 from isce-framework/BLM
diversity: replaced oppressive language
2020-07-15 20:33:22 -07:00
Ryan Burns 77d2f053d6
Merge pull request #157 from rtburns-jpl/gfortran10
Add argument mismatch workaround for gfortran 10
2020-07-09 15:19:55 -07:00
Ryan Burns 843f48f01f Add argument mismatch workaround for gfortran 10 2020-07-06 13:53:22 -07:00
Heresh Fattahi eb3eff61a6
Merge branch 'master' into BLM 2020-07-02 15:03:10 -07:00
Paul A Rosen e03042f4e5 diversity: replaced oppressive language with neutral definitions of the images that comprise an interferogram through the entire repository 2020-07-02 12:40:49 -07:00
Zhang Yunjun c642ab2e9a cuDenseOffset: check across oversample win size 2020-06-28 19:24:09 -07:00
Zhang Yunjun 90d578fa5d cuDenseOffsets: expose --raw-osf and --corr-win-size option
contrib/PyCuAmpcor/cuDenseOffsets.py:
+ expose --raw-over-samp-factor option to change the raw data oversampling factor with default of 2
+ expose --corr-win-size option, which by default, is calculated automatically based on the search window size and raw oversampling factor
+ change the namespace key for the oversampling factor of correlation surface from 'oversample' to 'corr_oversample' to avoid ambiguity, the cmd option name is still the same, thus no different in the user side.
+ use vrt file for master / slave slc data loading folllowing https://github.com/isce-framework/isce2/pull/78
+ re-organize createParse() for readability
+ add example to argparse help

stripmapStack/MaskAndFilter.py:
+ fix a bug introduced in #https://github.com/isce-framework/isce2/pull/112
+ add example usage to help message
+ mask pixels with SNR == 0, for plotting only without touching data files
+ show input parameter in the figure title
+ show percentage after SNR thresholding
+ add interpolation for matplotlib while plotting

topsStack/grossOffsets: move obsolete basemap import from the top to the related commented code block
2020-06-28 19:24:09 -07:00
Ryan Burns aaa6efebad
Merge pull request #136 from rtburns-jpl/cmake
CMake bugfixes and documentation
2020-06-25 11:45:36 -07:00
falkamelung 88def96714 logging.conf: larger file size 2020-06-23 11:26:36 -07:00
Ryan Burns 14db470624 Use rpaths for linked libraries 2020-06-15 22:28:08 -07:00
Ryan Burns a66dcfdb1b Merge branch 'master' into cmake 2020-06-12 18:36:55 -07:00
Ryan Burns ed25d657fa Update pycuampcor prereqs 2020-06-12 17:53:40 -07:00
Ryan Burns 53cceb221b Update GPUampcor prereqs, but disable it for now 2020-06-12 17:47:06 -07:00
Ryan Burns 98efa18f15 Use cmake findcudatoolkit 2020-06-12 17:43:54 -07:00
Cheryl edea69d4b6 added buffer margin to orbit times in get_orbit 2020-06-11 23:33:37 -07:00
shitong01 0fb49e383e fix syntax 2020-06-11 23:33:37 -07:00
shitong01 bb03d8c652 changed made by @cheryltwj to fix orbit file download edge case 2020-06-11 23:33:37 -07:00
piyushrpt a6e95fa2d3 Updating circleci config to handle alpine changes 2020-06-09 13:01:44 -07:00
dbekaert 1f2f344637
Merge pull request #147 from sssangha/sss_utilbug
Negative valid samples/lines now set to 0
2020-06-07 07:16:49 -07:00
sssangha acf0bbb55c Negative valid samples/lines now set to 0 2020-06-06 20:44:00 -07:00
dbekaert 54221944b1
Merge pull request #145 from CunrenLiang/master
fix bug in baseline computation
2020-06-06 09:17:12 -07:00
CunrenLiang 5bc4cd6466
fix bug in baseline computation 2020-06-06 00:12:54 -07:00
CunrenLiang 2b8fdb3acb
fix bug in baseline computation 2020-06-06 00:12:26 -07:00
CunrenLiang 167ac5ac6c
create an account for downloading DEM 2020-06-06 00:11:02 -07:00
Ryan Burns c209df26ad Set up proper fortran module directories 2020-06-04 11:42:37 -07:00
dbekaert 98acd33369
Merge pull request #141 from sssangha/baselinebug
Baseline bug fix for Sentinel-1
2020-06-04 06:50:11 -07:00
sssangha 87cffaaadd Baseline bug fix 2020-06-03 17:24:09 -07:00
piyushrpt 7db07f3768 Suppress zero sized log file creation 2020-05-31 15:21:39 -07:00
Ryan Burns b12fde65d8 Add PyCuAmpcor support 2020-05-28 18:02:17 -07:00
Ryan Burns 58e39cce25 Fix TargetX11 helper 2020-05-28 16:59:39 -07:00
Ryan Burns 6cd15a5bcd Fix isceLib cython compilation 2020-05-22 15:49:10 -07:00
Ryan Burns 17d5f06d65 Add contents section links for scons/cmake 2020-05-22 15:49:10 -07:00
Ryan Burns 1ad638b1de Install watermask and upsampledem modules 2020-05-22 15:49:10 -07:00
Ryan Burns ab5c20e629 Add envisat module 2020-05-22 15:49:10 -07:00
Ryan Burns f3fa2b0c6f Fix ISSI libname and data installation 2020-05-22 15:49:10 -07:00
Ryan Burns 8725bd0573 Simplify package-relative installation 2020-05-22 15:49:10 -07:00
Ryan Burns 149b4aa29a Add GPUampcor support with proper version check 2020-05-22 15:49:10 -07:00
Ryan Burns 5eadebc85d Add documentation for common cmake options 2020-05-22 15:49:10 -07:00
Ryan Burns d2b93796ca Add CMake instructions to README 2020-05-22 15:49:10 -07:00
dbekaert 579dfab302
Merge pull request #132 from CunrenLiang/master
updates for alos2App.py and alos2burstApp.py
2020-05-21 10:46:35 -07:00
Zhang Yunjun 35a80f0a5f bugfix in stripmapStack/Stack for config unwIfg if filter is turned off
If filter is turned OFF while unwrapping is still ON, the phase unwrapping output filename should not include "filt_" prefix.
2020-05-17 14:58:39 -07:00
yunjunz af5a8540f9 bugfix in topsStack/Stack while writing config_unwrap for rmFilter option
stackSentinel: more msg in checkCurrentStatus()
2020-05-17 14:58:39 -07:00
Zhang Yunjun 659a7ed6b0 stackSentinel: use 2 digit number in run_files to better sort 10 or more steps
update topsStack/README.md accordingly.

stackSentinel: suppress matplotlib DEBUG msg

stackSentinel: remove the unused imp import
2020-05-17 14:58:39 -07:00
Zhang Yunjun 0f60e9f24c FilterAndCoh: move cpx coh calc into a func
related with https://github.com/isce-framework/isce2/pull/97

+ move cpx cohe calculation code from main() to estCpxCoherence()
+ move computeCoherence import from the top to the inside of estCpxCoherence(), to avoid import error/warning sometimes.
+ fix typo in the default value of --cc option from 'fine.cori.full' to 'fine.cor.full'
2020-05-17 14:58:39 -07:00
CunrenLiang 1afdeed3c2
minor updates 2020-05-13 16:40:52 -07:00
CunrenLiang 84d3978640
minor updates 2020-05-13 16:39:41 -07:00