* topsApp.xml: add downsample_snaphu
* stackSentinel: bugfix if --bbox not specified in cmd
* stack*/unwrap: print time used msg
+ print out the time used message using time.time()
+ remove unused module imports
+ indentation adjustment
* cuDenseOffsets: add --fix-image-vrt
* fixImageXml: support multiple files w/ wildcards
* UAVSAR_Stack: bugfix for line/sample num and dopplerFile path
+ UAVSAR_Stack: use segment index while setting the number of lines / samples
+ UAVSAR_Stack: use self.dopplerFile if it exists otherwise use the path from *.ann file, to support unpackFrame_UAVSAR.py when dop file is not in the current directory
+ unpackFrame_UAVSAR: rename variables and comments to improve code readability
* use getattr() instead of hasattr()
* add unpack and prepare files for UAVSAR HDF5 files
* fix acq typo, expand stackStripMap to HDF5 UAVSAR
* remove comments from previous UAVSAR skeleton
* fix hard coded freq A, clarity on gdal format command
* track the prev guess in `geo2rdr`, break after convergence
* create doppler Poly once, avoid prints
Orbit.geo2rdr creates a poly, which prints "Polynomial Order: 0 - by - 0" each time
* stackStripMap.py: change numbering style to match with topsStack
* Stack.py: separate parallel processors in topo.py from runfiles
* stackSentinel.py: add a new argument for parallel processors in topo.py
* Stack.py: remove extra num_process for unpackStackReferenceSLC
* stackSentinel.py: tie numProcess4topo to numProcessif the first not specified
* added option to pass segment number through unpackFrame_UAVSAR
* changed type of segment number
* changed segment type in prepareUAVSAR_coregstack
* Revert "changed type of segment number"
This reverts commit a18c6452d4b5c95ce869dab2ee1e3bcf6ff2b1d9.
* Revert "changed segment type in prepareUAVSAR_coregstack"
This reverts commit 6cf3ebadb3a6e119c6084c8e03b8cc68d7eccc3f.
* changed type of segment number in unpackFrame_UAVSAR
* Added code to stripmapStack/topo.py to explicitly create the `geom_reference/hgt.rdr.vrt` file to work with newer GDAL
* added option to pass segment number through unpackFrame_UAVSAR
* changed type of segment number
* changed segment type in prepareUAVSAR_coregstack
* Revert "changed type of segment number"
This reverts commit a18c6452d4b5c95ce869dab2ee1e3bcf6ff2b1d9.
* Revert "changed segment type in prepareUAVSAR_coregstack"
This reverts commit 6cf3ebadb3a6e119c6084c8e03b8cc68d7eccc3f.
* changed type of segment number in unpackFrame_UAVSAR
+ update os.system() call of gdal2isce_xml.py with the python function call, in stripmapStack/topo.py and applications/downsampleDEM.py
+ break the long lines in downsampleDEM.py for easy reading
contrib/PyCuAmpcor/cuDenseOffsets.py:
+ expose --raw-over-samp-factor option to change the raw data oversampling factor with default of 2
+ expose --corr-win-size option, which by default, is calculated automatically based on the search window size and raw oversampling factor
+ change the namespace key for the oversampling factor of correlation surface from 'oversample' to 'corr_oversample' to avoid ambiguity, the cmd option name is still the same, thus no different in the user side.
+ use vrt file for master / slave slc data loading folllowing https://github.com/isce-framework/isce2/pull/78
+ re-organize createParse() for readability
+ add example to argparse help
stripmapStack/MaskAndFilter.py:
+ fix a bug introduced in #https://github.com/isce-framework/isce2/pull/112
+ add example usage to help message
+ mask pixels with SNR == 0, for plotting only without touching data files
+ show input parameter in the figure title
+ show percentage after SNR thresholding
+ add interpolation for matplotlib while plotting
topsStack/grossOffsets: move obsolete basemap import from the top to the related commented code block
+ FilterAndCoherence: skip filtering if input filter strength <= 0 and use original phase for coherence estimation
+ Stack: do not add filt_ prefix to output file if input filter strength <= 0
+ topo: merge runMultilookGdal() into runMultilook() with new argument "method" to control to use isce Looks module (averaging) or gdal_translate (extraction; default, same as before).
+ topo: call gdal2isce_xml.py so that xml file for multilooked data are always generate. This fix the warning message from gdal_translate: "Warning 1: Geotransform matrix has non rotational terms"
+ topo: skip multilooking if the data file has vrt/xml file missing, which sometimes happens to incLocal and shadowMask (don't know the cause yet; I used GPU version).
+ crossmul/resampleSlc: re-organize module import at the top of scripts
@falkamelung noted a race condition in #106 due to non-atomic directory
checking followed by os.makedirs. This pattern exists in many places
in the codebase so I went ahead and replaced the rest of them.
The new exist_ok usage should be terser and more idiomatic.
+ plot the evolution of offset after each step to better check the changes by masking, filling and filtering operations.
+ plot both azimuth and range offset in one figure and move the plotting to the end after file writing
+ update file path in xml file so that script can work even if the files are moved.
+ convert SNR nan value to zero before used as the mask, to avoid warning message
+ add the following options to customize the plot
- add -v and --v-snr option to change the display range for offset and SNR
- add --figsize and --save option
+ suppress the DEBUG message from matplotlib
+ remove obsolete getShape() and resampleOffset()
+ update IML module import
+ adjust indentation
+ dem.py: replace filename in xml file with abspath after geoid to ellipsoid correction
+ update README.md files in contrib/stack/*Stack, as fixImageXml.py is not needed anymore
+ fixImageXml: use native argparse mutually exclusive group for --full/--base options to replace checking with own code
+ convert README.txt to README.md
+ stackStripMap.py: group iono options in createParser()
- group all iono options in createParser() for more easily navigation in --help.
- fix typos in the descriptions for the script and --dem option.
Stack.py: add function call to create water mask file in radar coordinates in the step one "run_1_master_*"
createWaterMask.py: fill pixels without DEM data with value of -1, same as water body
add -d / --dem_file option to input DEM file as an alternative for --bbox option.
add dem2bbox() to grab bbox from existing DEM file
adjust download_waterMask() that: if DEM file is input, put downloaded water body mask file to the same directory as the DEM file.
adjust the default water mask file in radar coordinates that:
1. in the same directory as the input lat/lon files
2. named as "waterMask.rdr" instead of "swbdLat_*.wbd.rdr"
add example docstring and update parser description.
Stack:
+ add alks and rlks options in config.topo()
topo: if number of looks is larger than 1, generate multilooked geometry files
+ generate `geom_master` folder in the root directory, same level as `Igrams`
+ import mroipac.looks.Looks module to multilook the full resolution geometry files from `./merged/geom_master`
+ copy over the full resolution xml/vrt files from `./merged/geome` to `./geom_master` as `*.full.xml/vrt` files, to support the number of looks extraction for mintpy
+ bug fixed in extractInfo(). This was not a problem before because the default values are 1 and the custom values from argument was not inputed in the config file.
Stack:
+ add alks and rlks while writing config file for unwrap
unwrap:
+ calculate the az/rg spacing/resolution and the equivalent number of independent looks in extractInfoFromPickle()
+ uncomment corrlooks setting in runUnwrap()
Zachary Keskinen
Zhang Yunjun
Scott Staniewicz
Bryan Marfito
Ryan Burns
Sara Mirzaee
Ryan Burns
Eric Fielding
piyushrpt
Zhang Yunjun
Heresh Fattahi
Paul A Rosen
Ryan Burns
Eric J. Fielding
stoormgeo
Microwave Remote Sensing Laboratory
Eric Jameson Fielding