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127 Commits (337dc9c1580af3ccb97fcb4d4b6b6c87fdd55ab4)

Author SHA1 Message Date
Ryan Burns 337dc9c158
Fix python extension linking (#168) 
* Silence annoying FindFFTW warnings

* Fix linker errors at import-time

Python extensions are weakly linked, so linker errors can only be
caught at runtime. This commit fixes any such broken extensions,
and adds automated import testing to ctests to prevent future
regressions.

It also adds a helper function `isce2_add_staticlib` which creates a
position-independent static library suitable for usage in multiple
python extensions. This matches the SCons build scripts more closely
and allows for future extensions to be declared in a more terse and
hygienic fashion.

* Update utilLib scripts

* Update combinedLib scripts

* Update offoutliers lib scripts

* Add asa_im_decode cdll

* Update alos lib scripts

* Show ctest output upon failure

* Update DataAccessor scripts

* Remove TARGET_FILE_BASE_NAME

* Remove incomplete stdproc modules (require stanford code)

Co-authored-by: Ryan Burns <rtburns-jpl@users.noreply.github.com>
 2020-09-14 10:57:10 -07:00
Vincent Schut 278902fd1b
make sure the orbit file glob also finds files starting with S1B (#190) 2020-09-10 12:34:17 -07:00
JYC 1557a05b7b
Update AkimaLib.cpp (#186) 
add using namespace bug
 2020-08-26 00:00:53 -07:00
Heresh Fattahi b13d06aa3b
Merge pull request #166 from asolarte/main 
Add SAOCOM sensor
 2020-07-29 15:55:37 -07:00
asolarte 9983be8fe1 Cambios sugeridos por piyushrpt. Archivos modificados: 
modificado:     components/isceobj/Sensor/SAOCOM_SLC.py
	modificado:     examples/input_files/reference_SAOCOM.xml
 2020-07-27 13:56:07 -03:00
asolarte 5ea7981bfd Cambio en comentario Doppler SAOCOM_SLC.py 2020-07-27 12:01:51 -03:00
asolarte 02f6af6910 Cambios en la lectura del polinomio para el cálculo del doppler 
modificado:     components/isceobj/Sensor/SAOCOM_SLC.py
 2020-07-23 20:42:14 -03:00
asolarte 8c2429b3a5 Incorporación de script para ingesta de datos SAOCOM. Se modifican los siguientes archivos: 
modificado:     README.md
	modificado:     components/isceobj/InsarProc/Factories.py
	modificado:     components/isceobj/IsceProc/runPreprocessor.py
	modificado:     components/isceobj/Sensor/CMakeLists.txt
	nuevo archivo:  components/isceobj/Sensor/SAOCOM_SLC.py
	modificado:     components/isceobj/Sensor/SConscript
	modificado:     components/isceobj/Sensor/__init__.py
	modificado:     components/isceobj/StripmapProc/Factories.py
	modificado:     components/isceobj/Util/estimateoffsets/EstimateOffsets.py
	modificado:     components/stdproc/stdproc/__init__.py
	nuevo archivo:  examples/input_files/reference_SAOCOM.xml
 2020-07-21 21:47:00 -03:00
piyushrpt 9b3e531ac5 Adding openmp to missing modules 2020-07-18 23:54:07 -07:00
piyushrpt 2cc8178010 Use openmp for resamp_slc 2020-07-18 23:54:07 -07:00
Gerald Manipon f09213eb33
various updates from ARIA-related projects (#149) 
* add Dockerfile and SConfigISCE to build cuda-enabled modules

* add Dockerfile and SConfigISCE to build cuda-enabled modules

* set correct name

* update for centos7 and cuda-dev image

* restore

* disable GPUampcor

* update

* save

* sync up Dockerfile updates

* fix base image

* change docker image names

* create gpu vs. cpu specific tags

* update with nodata WBD Stitcher

* fix segmentation fault when running sciflo workflows

- remove dependencies that downgrade the `geos` conda package

* sync fix for segmentation fault to cuda builds

* ping ffi to version 1.12.2

Latest version of ffi, 1.13.0, breaks installation of fpm:
```
$ sudo gem install --no-ri --no-rdoc fpm
Fetching: cabin-0.9.0.gem (100%)
Successfully installed cabin-0.9.0
Fetching: backports-3.17.2.gem (100%)
Successfully installed backports-3.17.2
Fetching: arr-pm-0.0.10.gem (100%)
Successfully installed arr-pm-0.0.10
Fetching: clamp-1.0.1.gem (100%)
Successfully installed clamp-1.0.1
Fetching: ffi-1.13.0.gem (100%)
ERROR:  Error installing fpm:
        ffi requires Ruby version >= 2.3.
```
TODO: remove pin when ffi's backwards compatiblity is restored.

* comment out unused import

* add build circleci job to PR tests

* pin ffi in cuda build

* revert logging hackery

* fix "target_include_directories called with non-compilable target type" errors

* Keep source directory for topsStack

Co-authored-by: dustinlo <dustin.k.lo@jpl.nasa.gov>
Co-authored-by: shitong01 <stchin@ntu.edu.sg>
Co-authored-by: Ryan Burns <47790121+rtburns-jpl@users.noreply.github.com>
 2020-07-16 16:08:57 -07:00
Heresh Fattahi eb3eff61a6
Merge branch 'master' into BLM 2020-07-02 15:03:10 -07:00
Paul A Rosen e03042f4e5 diversity: replaced oppressive language with neutral definitions of the images that comprise an interferogram through the entire repository 2020-07-02 12:40:49 -07:00
Ryan Burns 14db470624 Use rpaths for linked libraries 2020-06-15 22:28:08 -07:00
Ryan Burns a66dcfdb1b Merge branch 'master' into cmake 2020-06-12 18:36:55 -07:00
Ryan Burns 53cceb221b Update GPUampcor prereqs, but disable it for now 2020-06-12 17:47:06 -07:00
CunrenLiang 5bc4cd6466
fix bug in baseline computation 2020-06-06 00:12:54 -07:00
CunrenLiang 2b8fdb3acb
fix bug in baseline computation 2020-06-06 00:12:26 -07:00
Ryan Burns c209df26ad Set up proper fortran module directories 2020-06-04 11:42:37 -07:00
sssangha 87cffaaadd Baseline bug fix 2020-06-03 17:24:09 -07:00
Ryan Burns ab5c20e629 Add envisat module 2020-05-22 15:49:10 -07:00
Ryan Burns 149b4aa29a Add GPUampcor support with proper version check 2020-05-22 15:49:10 -07:00
CunrenLiang 1afdeed3c2
minor updates 2020-05-13 16:40:52 -07:00
CunrenLiang 84d3978640
minor updates 2020-05-13 16:39:41 -07:00
CunrenLiang 708593b322
fixed a bug in radar dem matching 2020-05-13 09:54:54 -07:00
CunrenLiang f0651a311c
fixed a bug in radar dem matching 2020-05-12 22:35:28 -07:00
CunrenLiang aee2495367
improve ALOS-2 ionospheric correciton and geocode 2020-05-11 18:06:18 -07:00
CunrenLiang 28bb81ed03
improve ALOS-2 ionospheric correciton and geocode 2020-05-11 18:05:30 -07:00
Ryan Burns e68db01bf9
Merge pull request #89 from rtburns-jpl/cmake 
Add CMake build system
 2020-05-08 12:42:01 -07:00
Simon Kraatz fb7ad09211
pull request in response to rtcApp.py is incomplete #120 (#128) 
* Update README.md
* Update runTopo.py
* Update rtcApp.py
* Update runNormalize.py
* Update SConscript
 2020-05-06 15:04:58 -07:00
Ryan Burns 877ba1d05c Remove unused lib 2020-05-02 16:41:50 -07:00
Ryan Burns 4863c238e8 Merge branch 'master' into cmake 2020-05-02 16:40:26 -07:00
Ryan Burns fd963d3d21 Remove unused formslc includes 2020-05-02 16:30:10 -07:00
Ryan Burns d8c772ea29 Disable failing tests 2020-05-02 13:27:12 -07:00
Ryan Burns c08f0b55ea Enable -fPIC for StdOEL common lib 2020-05-02 12:45:23 -07:00
Ryan Burns 7cf564582a Merge branch 'master' into cmake 2020-05-02 12:32:20 -07:00
CunrenLiang 62726a5714 update ALOS-2 ionospheric correction 2020-05-02 12:11:54 -07:00
CunrenLiang c844d49b48 remove system calls 2020-05-02 12:11:54 -07:00
CunrenLiang d22bf1048f enhanced merging for ALOS-2 ionospheric correction 2020-04-26 19:18:33 -07:00
Ryan Burns 81b54197e6 Merge branch 'master' into cmake 2020-04-13 14:34:14 -07:00
Heresh Fattahi 435e802f04
Merge pull request #114 from CunrenLiang/master 
add back from scipy.interpolate import interp1d
 2020-04-13 13:07:01 -07:00
Ryan Burns 23f2ffaa1e
Use exist_ok argument to makedirs when appropriate (#112) 
@falkamelung noted a race condition in #106 due to non-atomic directory
checking followed by os.makedirs. This pattern exists in many places
in the codebase so I went ahead and replaced the rest of them.
The new exist_ok usage should be terser and more idiomatic.
 2020-04-13 12:40:32 -07:00
CunrenLiang ebe27ec44c
remove 'from scipy.interpolate import interp1d' 
remove the following from routines where it is not needed:
>     from scipy import interpolate
>     from scipy.interpolate import interp1d
 2020-04-13 12:34:51 -07:00
CunrenLiang c2a4a4a08e
add back from scipy.interpolate import interp1d 
add back the following imports:
1709a1710,1711
>     from scipy import interpolate
>     from scipy.interpolate import interp1d
2119a2122,2123
>     from scipy import interpolate
>     from scipy.interpolate import interp1d
 2020-04-13 12:11:04 -07:00
Lijun Zhu 5977d7b0dd disable GPUampcor (not used) to allow CUDA >=10.0 2020-04-09 21:01:00 -07:00
Lijun Zhu 0855bf2640 DenseOffsets with PyCuAmpcor: use '.slc.vrt' instead of '.slc' as inputs 2020-04-09 21:01:00 -07:00
Ryan Burns 34b1644956 Merge commit 'c92759a' into cmake 2020-04-08 12:03:59 -07:00
Ryan Burns a4068b0f92 Merge commit 'ed30cba' into cmake 2020-04-08 12:01:11 -07:00
Ryan Burns 85519c498d Merge commit 'f95a912' into cmake 2020-04-08 11:56:56 -07:00
Ryan Burns 4057a645a2 Merge commit '64768d4' into cmake 2020-04-08 11:05:14 -07:00