337dc9c158
Fix python extension linking ( #168 )
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* Silence annoying FindFFTW warnings
* Fix linker errors at import-time
Python extensions are weakly linked, so linker errors can only be
caught at runtime. This commit fixes any such broken extensions,
and adds automated import testing to ctests to prevent future
regressions.
It also adds a helper function `isce2_add_staticlib` which creates a
position-independent static library suitable for usage in multiple
python extensions. This matches the SCons build scripts more closely
and allows for future extensions to be declared in a more terse and
hygienic fashion.
* Update utilLib scripts
* Update combinedLib scripts
* Update offoutliers lib scripts
* Add asa_im_decode cdll
* Update alos lib scripts
* Show ctest output upon failure
* Update DataAccessor scripts
* Remove TARGET_FILE_BASE_NAME
* Remove incomplete stdproc modules (require stanford code)
Co-authored-by: Ryan Burns <rtburns-jpl@users.noreply.github.com>
2020-09-14 10:57:10 -07:00
278902fd1b
make sure the orbit file glob also finds files starting with S1B ( #190 )
2020-09-10 12:34:17 -07:00
1557a05b7b
Update AkimaLib.cpp ( #186 )
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add using namespace bug
2020-08-26 00:00:53 -07:00
b13d06aa3b
Merge pull request #166 from asolarte/main
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Add SAOCOM sensor
2020-07-29 15:55:37 -07:00
9983be8fe1
Cambios sugeridos por piyushrpt. Archivos modificados:
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modificado: components/isceobj/Sensor/SAOCOM_SLC.py
modificado: examples/input_files/reference_SAOCOM.xml
2020-07-27 13:56:07 -03:00
5ea7981bfd
Cambio en comentario Doppler SAOCOM_SLC.py
2020-07-27 12:01:51 -03:00
02f6af6910
Cambios en la lectura del polinomio para el cálculo del doppler
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modificado: components/isceobj/Sensor/SAOCOM_SLC.py
2020-07-23 20:42:14 -03:00
8c2429b3a5
Incorporación de script para ingesta de datos SAOCOM. Se modifican los siguientes archivos:
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modificado: README.md
modificado: components/isceobj/InsarProc/Factories.py
modificado: components/isceobj/IsceProc/runPreprocessor.py
modificado: components/isceobj/Sensor/CMakeLists.txt
nuevo archivo: components/isceobj/Sensor/SAOCOM_SLC.py
modificado: components/isceobj/Sensor/SConscript
modificado: components/isceobj/Sensor/__init__.py
modificado: components/isceobj/StripmapProc/Factories.py
modificado: components/isceobj/Util/estimateoffsets/EstimateOffsets.py
modificado: components/stdproc/stdproc/__init__.py
nuevo archivo: examples/input_files/reference_SAOCOM.xml
2020-07-21 21:47:00 -03:00
9b3e531ac5
Adding openmp to missing modules
2020-07-18 23:54:07 -07:00
2cc8178010
Use openmp for resamp_slc
2020-07-18 23:54:07 -07:00
f09213eb33
various updates from ARIA-related projects ( #149 )
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* add Dockerfile and SConfigISCE to build cuda-enabled modules
* add Dockerfile and SConfigISCE to build cuda-enabled modules
* set correct name
* update for centos7 and cuda-dev image
* restore
* disable GPUampcor
* update
* save
* sync up Dockerfile updates
* fix base image
* change docker image names
* create gpu vs. cpu specific tags
* update with nodata WBD Stitcher
* fix segmentation fault when running sciflo workflows
- remove dependencies that downgrade the `geos` conda package
* sync fix for segmentation fault to cuda builds
* ping ffi to version 1.12.2
Latest version of ffi, 1.13.0, breaks installation of fpm:
```
$ sudo gem install --no-ri --no-rdoc fpm
Fetching: cabin-0.9.0.gem (100%)
Successfully installed cabin-0.9.0
Fetching: backports-3.17.2.gem (100%)
Successfully installed backports-3.17.2
Fetching: arr-pm-0.0.10.gem (100%)
Successfully installed arr-pm-0.0.10
Fetching: clamp-1.0.1.gem (100%)
Successfully installed clamp-1.0.1
Fetching: ffi-1.13.0.gem (100%)
ERROR: Error installing fpm:
ffi requires Ruby version >= 2.3.
```
TODO: remove pin when ffi's backwards compatiblity is restored.
* comment out unused import
* add build circleci job to PR tests
* pin ffi in cuda build
* revert logging hackery
* fix "target_include_directories called with non-compilable target type" errors
* Keep source directory for topsStack
Co-authored-by: dustinlo <dustin.k.lo@jpl.nasa.gov>
Co-authored-by: shitong01 <stchin@ntu.edu.sg>
Co-authored-by: Ryan Burns <47790121+rtburns-jpl@users.noreply.github.com>
2020-07-16 16:08:57 -07:00
eb3eff61a6
Merge branch 'master' into BLM
2020-07-02 15:03:10 -07:00
e03042f4e5
diversity: replaced oppressive language with neutral definitions of the images that comprise an interferogram through the entire repository
2020-07-02 12:40:49 -07:00
14db470624
Use rpaths for linked libraries
2020-06-15 22:28:08 -07:00
a66dcfdb1b
Merge branch 'master' into cmake
2020-06-12 18:36:55 -07:00
53cceb221b
Update GPUampcor prereqs, but disable it for now
2020-06-12 17:47:06 -07:00
5bc4cd6466
fix bug in baseline computation
2020-06-06 00:12:54 -07:00
2b8fdb3acb
fix bug in baseline computation
2020-06-06 00:12:26 -07:00
c209df26ad
Set up proper fortran module directories
2020-06-04 11:42:37 -07:00
87cffaaadd
Baseline bug fix
2020-06-03 17:24:09 -07:00
ab5c20e629
Add envisat module
2020-05-22 15:49:10 -07:00
149b4aa29a
Add GPUampcor support with proper version check
2020-05-22 15:49:10 -07:00
1afdeed3c2
minor updates
2020-05-13 16:40:52 -07:00
84d3978640
minor updates
2020-05-13 16:39:41 -07:00
708593b322
fixed a bug in radar dem matching
2020-05-13 09:54:54 -07:00
f0651a311c
fixed a bug in radar dem matching
2020-05-12 22:35:28 -07:00
aee2495367
improve ALOS-2 ionospheric correciton and geocode
2020-05-11 18:06:18 -07:00
28bb81ed03
improve ALOS-2 ionospheric correciton and geocode
2020-05-11 18:05:30 -07:00
e68db01bf9
Merge pull request #89 from rtburns-jpl/cmake
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Add CMake build system
2020-05-08 12:42:01 -07:00
fb7ad09211
pull request in response to rtcApp.py is incomplete #120 ( #128 )
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* Update README.md
* Update runTopo.py
* Update rtcApp.py
* Update runNormalize.py
* Update SConscript
2020-05-06 15:04:58 -07:00
877ba1d05c
Remove unused lib
2020-05-02 16:41:50 -07:00
4863c238e8
Merge branch 'master' into cmake
2020-05-02 16:40:26 -07:00
fd963d3d21
Remove unused formslc includes
2020-05-02 16:30:10 -07:00
d8c772ea29
Disable failing tests
2020-05-02 13:27:12 -07:00
c08f0b55ea
Enable -fPIC for StdOEL common lib
2020-05-02 12:45:23 -07:00
7cf564582a
Merge branch 'master' into cmake
2020-05-02 12:32:20 -07:00
62726a5714
update ALOS-2 ionospheric correction
2020-05-02 12:11:54 -07:00
c844d49b48
remove system calls
2020-05-02 12:11:54 -07:00
d22bf1048f
enhanced merging for ALOS-2 ionospheric correction
2020-04-26 19:18:33 -07:00
81b54197e6
Merge branch 'master' into cmake
2020-04-13 14:34:14 -07:00
435e802f04
Merge pull request #114 from CunrenLiang/master
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add back from scipy.interpolate import interp1d
2020-04-13 13:07:01 -07:00
23f2ffaa1e
Use exist_ok argument to makedirs when appropriate ( #112 )
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@falkamelung noted a race condition in #106 due to non-atomic directory
checking followed by os.makedirs. This pattern exists in many places
in the codebase so I went ahead and replaced the rest of them.
The new exist_ok usage should be terser and more idiomatic.
2020-04-13 12:40:32 -07:00
ebe27ec44c
remove 'from scipy.interpolate import interp1d'
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remove the following from routines where it is not needed:
> from scipy import interpolate
> from scipy.interpolate import interp1d
2020-04-13 12:34:51 -07:00
c2a4a4a08e
add back from scipy.interpolate import interp1d
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add back the following imports:
1709a1710,1711
> from scipy import interpolate
> from scipy.interpolate import interp1d
2119a2122,2123
> from scipy import interpolate
> from scipy.interpolate import interp1d
2020-04-13 12:11:04 -07:00
5977d7b0dd
disable GPUampcor (not used) to allow CUDA >=10.0
2020-04-09 21:01:00 -07:00
0855bf2640
DenseOffsets with PyCuAmpcor: use '.slc.vrt' instead of '.slc' as inputs
2020-04-09 21:01:00 -07:00
34b1644956
Merge commit 'c92759a' into cmake
2020-04-08 12:03:59 -07:00
a4068b0f92
Merge commit 'ed30cba' into cmake
2020-04-08 12:01:11 -07:00
85519c498d
Merge commit 'f95a912' into cmake
2020-04-08 11:56:56 -07:00
4057a645a2
Merge commit '64768d4' into cmake
2020-04-08 11:05:14 -07:00
ed30cbac42
Cleaning up scansar modules
2020-03-31 11:33:11 -07:00
50816f88ae
Fix tracknumber for S1B
2020-03-31 11:33:11 -07:00
f95a912462
ALOS-2 multi-mode InSAR and ionospheric correction processors ( #107 )
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* Add files via upload
* updated tutorials and example input files
* add permissions
* add executable permission
* add executable permission to ALOS-2 applications
2020-03-28 19:19:21 -07:00
64768d4f36
Error messages ( #105 )
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* move `val` definition to avoid undefined
Currently, with only one swath, or not enough points,
val doesnt get defined, so this error gets thrown:
File ".../isce/components/isceobj/TopsProc/runESD.py", line 115, in runESD
if val.size == 0 :
UnboundLocalError: local variable 'val' referenced before assignment
the `np.array` is added so that the `val.size` check makes sense,
as opposed to doing `.size` on a list
* fix string formats in error messages
2020-03-27 21:59:13 -07:00
ea24d2320b
iscesys/DictUtils: made a copy of the configuration dict before iterating over it
2020-03-18 11:26:00 -07:00
d6e22a762f
Merge pull request #84 from rtburns-jpl/argcount
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Bugfixes for gcc/gfortran 9
2020-03-13 22:27:19 -07:00
655c46cc4a
Remove overwrite assignment when redundant bursts encountered across scenes.
2020-03-13 10:46:49 +08:00
9bee1a326b
Fix complex cast for gcc9
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Fixes #57
2020-03-10 09:00:46 -07:00
de0ea75272
Update dependencies
2020-02-27 08:51:27 -08:00
9f9f7be0d7
Inserted opencv, astropy ans scipy imports within functions
2020-02-13 17:27:07 -08:00
7c7e43c98c
bug fixes
2020-02-10 17:53:38 -08:00
3f01fd2f07
Modified algorithm for ionospheric phase estimation (polar regions)
2020-02-10 17:07:09 -08:00
d7444e83ca
Modified Ionospheric phase correction. It fixs previous version bugs and adds ionospheric phase correction facilities for grounded ice areas
2020-02-10 15:11:45 -08:00
66df719e71
Add isceobj.Sensor.ScanSAR
2020-02-03 17:51:39 -08:00
5d6a731753
Remove internal usage of ISCE_HOME env variable
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ISCE_HOME was only used to get the location of the default logging config.
Lots of scripts were using boilerplate to set up this config, so I added
an `isce.logging` helper module which is the same as builtin python logging
but already has the configuration defaults set up for isce.
ISCE_HOME setup is retained in the toplevel `__init__.py`
but can now be removed without affecting functionality.
2020-02-03 14:01:57 -08:00
6a5ae46e4e
Fix rpath by installing shared libs to system path
2020-02-03 11:58:38 -08:00
7274dbd2a4
Merge branch 'master' into cmake
2020-01-30 22:28:54 -08:00
0704e98ac4
remove a commented out line
2019-12-26 23:08:17 -08:00
0b3d49744d
fixing bug in naming interferogram without rubbersheeting
2019-12-26 23:02:35 -08:00
46fef17f39
Add CMake build system
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This commit adds experimental CMake build support for ISCE2.
The only changes involved should be adding CMakeLists.txt files.
All current source files, headers, and other functionality, including
the existing SCons build system, should be unaffected.
Some functionality is still a work-in-progress.
These should all be marked as TODO in the CMakeLists.txt files.
`grep TODO **.txt`
Please read CMakeLists.txt and .cmake/*.cmake for more info.
2019-12-21 17:34:50 -08:00
851858b228
Update runRubbersheetAzimuth.py
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Add "from scipy import ndimage"
2019-12-19 19:13:43 -06:00
7df2b44a0c
Change doRubbersheeting to doRubbersheetingAzimuth.
2019-12-18 14:44:34 -06:00
6b42742b00
Remove use of malloc.h
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This header is deprecated and Linux-specific.
The standard include for malloc should be stdlib.h.
2019-12-17 13:38:09 -08:00
e2a81bbd6a
Hide scipy imports for stripmapapp
2019-12-16 15:43:04 -08:00
537bae03d9
Hide rubbersheeting scipy/astropy imports
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Recent rubbersheeting changes added scipy and astropy imports which
are not otherwise needed. Due to isce2's eager import behavior this
causes errors when using unrelated functionality. We can fix this
by tucking these imports away inside their function definitions.
To reproduce:
`python3 -c "import isce; from stripmapApp import Insar"`
(without scipy/astropy installed)
2019-12-16 15:43:04 -08:00
21675df724
Bug fixes for rubbersheeting
2019-12-10 09:54:36 -08:00
6e4fcadce8
fix bug while calculating corrLooks for snaphu(_mcf)
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Currently, the number of looks in azimuth direction is used twice instead of once while calculating the `corrLooks` value.
Below is the relevant document of `NCORRLOOKS` in SNPAHU:
https://web.stanford.edu/group/radar/softwareandlinks/sw/snaphu/snaphu.conf.full
2019-11-21 13:20:11 -08:00
d1d9516890
cuda: remove arch specific flag; add /lib64 to LIBPATH for libcuda.so for most Linux systems
2019-11-19 16:51:06 -08:00
5908499c67
Merge pull request #74 from vbrancat/master
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Bug fixing
2019-11-18 09:27:55 -08:00
5078c3ec8c
Add RubbersheetRange.py and runRubbersheetAzimuth.py in SConscript
2019-11-15 20:01:56 -08:00
532cfa085b
Fixed some bugs in rubbersheeting and runInterferogram
2019-11-13 10:33:46 -08:00
37a510fd2d
add rubbersheetRange and rubbersheetAzimuth in Factories.py
2019-11-12 10:28:40 -08:00
8042232718
Property is not callable
2019-10-28 14:51:58 -08:00
44cdd7dbf1
Added iterative multiplication for interferogram flattening
2019-10-15 10:28:33 -07:00
4631aff062
Added runInterferogram.py
2019-10-14 10:16:15 -07:00
31da6a36f4
Added runRubbersheetRange.py and runRubbersheetAzimuth.py, changed offset filling, moved flat-Earth removal to interferogram formation when rubber sheeting in range is on
2019-10-14 10:05:24 -07:00
0e3b06567f
Add files via upload
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changed to use imagemath.main() instead of command line
2019-09-30 15:26:54 -04:00
14418467ae
Add files via upload
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fixed issues relating to finding and selecting between orbits
2019-09-27 13:21:43 -04:00
ab805ed1a3
Update runNormalize.py
2019-09-26 16:51:54 -04:00
9d7908beaf
Add files via upload
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updated for radiometric terrain correction
control looks by providing 'posting' in xml
2019-09-26 15:25:09 -04:00
c6e8c7922e
Add files via upload
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updated mainly to read the zipped datasets, remove orbit extender, try except for precise/coarse orbit
2019-09-26 15:18:08 -04:00
950708ff66
Fix mismatched iand parameter types
2019-08-26 10:49:41 -07:00
c9a6ba9fe0
Restore snaphu_mcf unwrapping option
2019-07-31 10:08:41 -08:00
20eecc127d
Updates the sensor: UAVSAR_HDF5_SLC
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- fixes issues with reference UTC (when it includes microseconds);
- updates cast from complex32 to complex64 (some versions require complex64 casting through a "sink" - with statement).
2019-07-29 14:46:51 -07:00
b8f8199001
- fixing issues with reference UTC (when it includes microseconds);
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- fixing the cast from complex32 to complex64 (some versions require complex64 casting through a "sink" - with statement)'
2019-07-29 09:21:28 -07:00
2d95cafd11
Adding UAVSAR_HDF5_SLC to SConscript
2019-07-18 13:23:52 -07:00
29bcd78842
ALOS Quad pol fix
2019-07-17 11:11:33 -07:00
6ca61fb42b
adding UAVSAR_HDF5_SLC Sensor
2019-07-16 21:37:06 +00:00
0409e03520
Merge pull request #46 from piyushrpt/iceye
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Adding ICEYE_SLC Sensor
2019-06-29 16:13:24 -07:00
005616e52c
Merge pull request #45 from giangijpl/master
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Added downsample_snapu factory to TopsProc/Factories.py
2019-06-24 14:13:16 -07:00
Ryan Burns
Vincent Schut
JYC
Heresh Fattahi
asolarte
piyushrpt
Gerald Manipon
Paul A Rosen
Ryan Burns
CunrenLiang
sssangha
Simon Kraatz
Lijun Zhu
Scott Staniewicz
Michael Aïvázis
shitong01
vbrancat
HBaldwin3
Zhang Yunjun
Joseph H Kennedy
Microwave Remote Sensing Laboratory
Andrew Johnston
shiroma