Commit Graph

27 Commits (038c04d5b904d29de1fa8e82cc7ddcc2e25b84d1)

Author SHA1 Message Date
Lijun Zhu 7b51af405d cuda Scons fix: remove unnecessary -lcuda which prevents compiling on cluster head node without cuda drivers 2021-04-15 00:40:16 -07:00
Zhang Yunjun d81a98094e cuDenseOffsets: add prepareGeometry()
PyCuAmpcor/examples/cuDenseOffsets:
+ add prepareGeometry() to generate the cooresponding geometry file
+ update file path in xml file to support dir change
+ fix str.decode bug with try/except statement
+ printout used time
+ check --redo before initiate PyCuAmpcor to avoid the long GPU memory error message

PyCuAmpcor/README.md: fix typos for ROIPAC
2021-03-05 19:16:31 -08:00
Lijun Zhu 7c40da5a74 PyCuAmpcor: offer an option to add gross offset to output offset image 2021-02-16 13:02:04 -08:00
Lijun Zhu 563568561d change runDenseOffset(s) in Alos2Proc/TopsProc in accordance with updated PyCuAmpcor 2021-02-13 12:56:58 -08:00
Lijun Zhu 86a35acd5e merge mzzhong/grossOffsets into pycuampcor: scripts to set varying offsets withe velocity model 2021-02-13 12:55:04 -08:00
Lijun Zhu 4ddee2fdaf PyCuAmpcor: fix the help string in cuDenseOffsets.py 2021-02-06 12:02:34 -08:00
Lijun Zhu 5419353a69 PyCuAmpcor: fix the correlation surface variance estimation 2021-02-06 12:02:34 -08:00
Minyan Zhong d5e5067acd update 2021-02-06 12:02:34 -08:00
Minyan Zhong 19ee850211 fix-variance-estimation 2021-02-06 12:02:34 -08:00
Lijun Zhu 7e9c86910a PyCuAmcpor: set default gpu id to 0 in cuDenseOffsets.py; the auto seek with a negative value is now disabled 2020-12-15 13:33:34 -08:00
Lijun Zhu 6d9f088975 PyCuAmpcor: cuDenseOffsets.py towork with input varying gross offsets 2020-11-30 10:30:23 -08:00
Minyan Zhong c399d3fa03 clean up and update grossOffsets 2020-11-30 00:49:28 -08:00
Lijun Zhu 94caa1ea5c PyCuAmpcor: more code cleanup
* replace tabs with spaces to align the code

  * remove extra spaces at the end of lines

  * add more docstrings
2020-11-25 12:55:38 -08:00
Lijun Zhu 38646456d3 PyCuAmpcor: code cleanup, add docstrings 2020-11-17 23:22:37 -08:00
Lijun Zhu a393282b69 PyCuAmpcor updates:
* added a README.md for installation/user guide/procedures

  * modified the cuDenseOffsets.py
     * expose more options from the CUDA/C++ program
     * add an option for varying gross offset input
     * clarify the parameter definitions

  * removed old SlcImage implementation and cublas dependence

  * modified cuSincOversampler
    * to be consistent with cpu version
    * fix an issue when the extraction of the search window is not around the center

  * added a debug mode to output intermediate results

  * enable cuda error checking for both Debug/Release build types

  * corrected the code to extract raw images when the correlation surface peak is close to edges

  * Move utf-8 decoding step inside cython extension

    The cython setters take python strings, but the getters return
    python bytes, so this makes the types match up. I went with regular
    python strings for the interface since they are more common at the
    python level, so the encoding/decoding is now an implementation detail
    of the cython extension.

Contributed by lijun99, rtburns-jpl, vbrancat, mzzhong
2020-11-12 15:02:44 -08:00
Gerald Manipon f09213eb33
various updates from ARIA-related projects (#149)
* add Dockerfile and SConfigISCE to build cuda-enabled modules

* add Dockerfile and SConfigISCE to build cuda-enabled modules

* set correct name

* update for centos7 and cuda-dev image

* restore

* disable GPUampcor

* update

* save

* sync up Dockerfile updates

* fix base image

* change docker image names

* create gpu vs. cpu specific tags

* update with nodata WBD Stitcher

* fix segmentation fault when running sciflo workflows

- remove dependencies that downgrade the `geos` conda package

* sync fix for segmentation fault to cuda builds

* ping ffi to version 1.12.2

Latest version of ffi, 1.13.0, breaks installation of fpm:
```
$ sudo gem install --no-ri --no-rdoc fpm
Fetching: cabin-0.9.0.gem (100%)
Successfully installed cabin-0.9.0
Fetching: backports-3.17.2.gem (100%)
Successfully installed backports-3.17.2
Fetching: arr-pm-0.0.10.gem (100%)
Successfully installed arr-pm-0.0.10
Fetching: clamp-1.0.1.gem (100%)
Successfully installed clamp-1.0.1
Fetching: ffi-1.13.0.gem (100%)
ERROR:  Error installing fpm:
        ffi requires Ruby version >= 2.3.
```
TODO: remove pin when ffi's backwards compatiblity is restored.

* comment out unused import

* add build circleci job to PR tests

* pin ffi in cuda build

* revert logging hackery

* fix "target_include_directories called with non-compilable target type" errors

* Keep source directory for topsStack

Co-authored-by: dustinlo <dustin.k.lo@jpl.nasa.gov>
Co-authored-by: shitong01 <stchin@ntu.edu.sg>
Co-authored-by: Ryan Burns <47790121+rtburns-jpl@users.noreply.github.com>
2020-07-16 16:08:57 -07:00
Heresh Fattahi eb3eff61a6
Merge branch 'master' into BLM 2020-07-02 15:03:10 -07:00
Paul A Rosen e03042f4e5 diversity: replaced oppressive language with neutral definitions of the images that comprise an interferogram through the entire repository 2020-07-02 12:40:49 -07:00
Zhang Yunjun c642ab2e9a cuDenseOffset: check across oversample win size 2020-06-28 19:24:09 -07:00
Zhang Yunjun 90d578fa5d cuDenseOffsets: expose --raw-osf and --corr-win-size option
contrib/PyCuAmpcor/cuDenseOffsets.py:
+ expose --raw-over-samp-factor option to change the raw data oversampling factor with default of 2
+ expose --corr-win-size option, which by default, is calculated automatically based on the search window size and raw oversampling factor
+ change the namespace key for the oversampling factor of correlation surface from 'oversample' to 'corr_oversample' to avoid ambiguity, the cmd option name is still the same, thus no different in the user side.
+ use vrt file for master / slave slc data loading folllowing https://github.com/isce-framework/isce2/pull/78
+ re-organize createParse() for readability
+ add example to argparse help

stripmapStack/MaskAndFilter.py:
+ fix a bug introduced in #https://github.com/isce-framework/isce2/pull/112
+ add example usage to help message
+ mask pixels with SNR == 0, for plotting only without touching data files
+ show input parameter in the figure title
+ show percentage after SNR thresholding
+ add interpolation for matplotlib while plotting

topsStack/grossOffsets: move obsolete basemap import from the top to the related commented code block
2020-06-28 19:24:09 -07:00
Ryan Burns ed25d657fa Update pycuampcor prereqs 2020-06-12 17:53:40 -07:00
Ryan Burns b12fde65d8 Add PyCuAmpcor support 2020-05-28 18:02:17 -07:00
Minyan Zhong 4f0a2f551c add a gpu ampcor driver 2020-05-02 15:52:31 -07:00
Lijun Zhu 4cc13950a8 PyCuAmpcor: add gdal lib to link 2020-04-09 21:01:00 -07:00
Lijun Zhu 434a71322f PyCuAmpcor: fixed #include gdal headers 2020-04-09 21:01:00 -07:00
Lijun Zhu df4db88ffa PyCuAmpcor: updated to the most recent version with gdal input 2019-11-19 16:59:49 -08:00
Eric Gurrola 9f9a2b0805 Adding all files 2019-01-16 11:40:08 -08:00