* topsApp.xml: add downsample_snaphu
* stackSentinel: bugfix if --bbox not specified in cmd
* stack*/unwrap: print time used msg
+ print out the time used message using time.time()
+ remove unused module imports
+ indentation adjustment
* cuDenseOffsets: add --fix-image-vrt
* fixImageXml: support multiple files w/ wildcards
+ fix a bug of location shift in the input of prepGeometry()
+ add return of geomDict in estimateOffsetField() to support re-run for geometry only without --redo in cmd
+ move the redo check of cuDenseOffsets.py back the previous location, which is right before the actually running, in order to use the previous setup parameter code for geometry preparation only without re-run offset when it already exists.
+ remove size checking to be consistent with the latest version from Lijun with support of large win size
+ support full resolution geometry files without ".full" in the filename, such as provided by stripmapStack
+ add --fix-xml option to update the image file path in the xml file, so that IML.loadImage is not called all the time, which could lead to file access issue when multiple processes use the same SLC file
PyCuAmpcor/examples/cuDenseOffsets:
+ add prepareGeometry() to generate the cooresponding geometry file
+ update file path in xml file to support dir change
+ fix str.decode bug with try/except statement
+ printout used time
+ check --redo before initiate PyCuAmpcor to avoid the long GPU memory error message
PyCuAmpcor/README.md: fix typos for ROIPAC
* added a README.md for installation/user guide/procedures
* modified the cuDenseOffsets.py
* expose more options from the CUDA/C++ program
* add an option for varying gross offset input
* clarify the parameter definitions
* removed old SlcImage implementation and cublas dependence
* modified cuSincOversampler
* to be consistent with cpu version
* fix an issue when the extraction of the search window is not around the center
* added a debug mode to output intermediate results
* enable cuda error checking for both Debug/Release build types
* corrected the code to extract raw images when the correlation surface peak is close to edges
* Move utf-8 decoding step inside cython extension
The cython setters take python strings, but the getters return
python bytes, so this makes the types match up. I went with regular
python strings for the interface since they are more common at the
python level, so the encoding/decoding is now an implementation detail
of the cython extension.
Contributed by lijun99, rtburns-jpl, vbrancat, mzzhong
contrib/PyCuAmpcor/cuDenseOffsets.py:
+ expose --raw-over-samp-factor option to change the raw data oversampling factor with default of 2
+ expose --corr-win-size option, which by default, is calculated automatically based on the search window size and raw oversampling factor
+ change the namespace key for the oversampling factor of correlation surface from 'oversample' to 'corr_oversample' to avoid ambiguity, the cmd option name is still the same, thus no different in the user side.
+ use vrt file for master / slave slc data loading folllowing https://github.com/isce-framework/isce2/pull/78
+ re-organize createParse() for readability
+ add example to argparse help
stripmapStack/MaskAndFilter.py:
+ fix a bug introduced in #https://github.com/isce-framework/isce2/pull/112
+ add example usage to help message
+ mask pixels with SNR == 0, for plotting only without touching data files
+ show input parameter in the figure title
+ show percentage after SNR thresholding
+ add interpolation for matplotlib while plotting
topsStack/grossOffsets: move obsolete basemap import from the top to the related commented code block