Switch dockerfile over from hysds image to ubuntu 20.04

.circleci/config.yml

@@ -24,7 +24,7 @@ jobs:
             mkdir config build install
             . /opt/conda/bin/activate root
             conda install -y cython gdal h5py libgdal pytest numpy fftw scipy scons hdf4 hdf5 libgcc libstdcxx-ng cmake astropy pybind11
-            yum install -y x11-devel motif-devel jq gcc-gfortran opencv opencv-devel opencv-python
+            yum install -y libX11-devel motif-devel jq gcc-gfortran opencv-core
 
       - run:
           name: Build and Install ISCE
@@ -82,7 +82,7 @@ jobs:
             mkdir config build install
             . /opt/conda/bin/activate root
             conda install --yes cython gdal h5py libgdal pytest numpy fftw scipy scons hdf4 hdf5 libgcc libstdcxx-ng cmake astropy pybind11
-            yum install -y uuid-devel x11-devel motif-devel jq gcc-gfortran opencv opencv-devel opencv-python
+            yum install -y libuuid-devel libX11-devel motif-devel jq gcc-gfortran opencv-core
             ln -s /opt/conda/bin/cython /opt/conda/bin/cython3
             cd /opt/conda/lib
             unlink libuuid.so

docker/Dockerfile

@@ -1,115 +1,66 @@
-FROM hysds/dev:latest
+FROM ubuntu:20.04 as builder
 
 # Set an encoding to make things work smoothly.
 ENV LANG en_US.UTF-8
+ENV TZ US/Pacific
+ARG DEBIAN_FRONTEND=noninteractive
 
-# Set ISCE repo
-ENV ISCE_ORG isce-framework
-
-# set to root user
-USER root
-
-# install tools for RPM generation
 RUN set -ex \
- && yum update -y \
- && yum groupinstall -y "development tools" \
- && yum install -y \
-      make ruby-devel rpm-build rubygems \
- && gem install ffi -v 1.12.2 \
- && gem install --no-ri --no-rdoc fpm -v 1.11.0
-
-# install isce requirements
-RUN set -ex \
- && . /opt/conda/bin/activate root \
- && conda install --yes \
-      cython \
-      gdal \
-      git \
-      h5py \
-      libgdal \
-      pytest \
-      numpy \
-      fftw \
-      scipy \
-      scons \
-      hdf4 \
-      hdf5 \
-      libgcc \
-      libstdcxx-ng \
-      cmake \
- && yum install -y uuid-devel x11-devel motif-devel jq \
-    opencv opencv-devel opencv-python \
- && ln -sf /opt/conda/bin/cython /opt/conda/bin/cython3 \
- && mkdir -p /opt/isce2/src
-
-# override system libuuid into conda env to link in libXm and libXt
-RUN set -ex \
- && cd /opt/conda/lib \
- && unlink libuuid.so \
- && unlink libuuid.so.1 \
- && ln -s /lib64/libuuid.so.1.3.0 libuuid.so \
- && ln -s /lib64/libuuid.so.1.3.0 libuuid.so.1
-
-# install libgfortran.so.3 and create missing link
-RUN set -ex \
- && yum install -y gcc-gfortran \
- && cd /lib64 \
- && ( test -f libgfortran.so || ln -sv libgfortran.so.*.* libgfortran.so )
+ && apt-get update \
+ && apt-get install -y \
+    cmake \
+    cython3 \
+    git \
+    libfftw3-dev \
+    libgdal-dev \
+    libhdf4-alt-dev \
+    libhdf5-dev \
+    libopencv-dev \
+    ninja-build \
+    python3-gdal \
+    python3-h5py \
+    python3-numpy \
+    python3-scipy \
+ && echo done
 
 # copy repo
 COPY . /opt/isce2/src/isce2
 
 # build ISCE
 RUN set -ex \
- && . /opt/conda/bin/activate root \
  && cd /opt/isce2/src/isce2 \
- && source docker/build_env.sh \
- && mkdir -p $BUILD_DIR \
- && cp docker/SConfigISCE configuration/SConfigISCE \
- && scons install \
- && cp docker/isce_env.sh $ISCE_INSTALL_ROOT \
- && cd /tmp \
- && mkdir -p /tmp/rpm-build/opt \
- && mv $ISCE_INSTALL_ROOT /tmp/rpm-build/opt \
- && curl -s https://api.github.com/repos/$ISCE_ORG/isce2/git/refs/heads/main \
-    > /tmp/rpm-build/opt/isce2/version.json \
- && hash=$(cat /tmp/rpm-build/opt/isce2/version.json | jq -r .object.sha) \
- && short_hash=$(echo $hash | cut -c1-5) \
- && fpm -s dir -t rpm -C /tmp/rpm-build --name isce \
-      --prefix=/ --version=2.3 --provides=isce \
-      --maintainer=piyush.agram@jpl.nasa.gov \
-      --description="InSAR Scientific Computing Environment v2 (${hash})"
+ && mkdir build && cd build \
+ && cmake .. \
+        -DPYTHON_MODULE_DIR="$(python3 -c 'import site; print(site.getsitepackages()[-1])')" \
+        -DCMAKE_INSTALL_PREFIX=install \
+ && make -j8 install \
+ && cpack -G DEB \
+ && cp isce*.deb /tmp/
 
-FROM hysds/pge-base:latest
+FROM ubuntu:20.04
 
 # Set an encoding to make things work smoothly.
 ENV LANG en_US.UTF-8
+ENV TZ US/Pacific
+ARG DEBIAN_FRONTEND=noninteractive
 
-# install ISCE from RPM
-COPY --from=0 /tmp/isce-2.3-1.x86_64.rpm /tmp/isce-2.3-1.x86_64.rpm
-
-# install isce and its minimal requirements
 RUN set -ex \
- && sudo /opt/conda/bin/conda install --yes \
-      gdal \
-      h5py \
-      libgdal \
-      pytest \
-      numpy \
-      fftw \
-      scipy \
-      hdf4 \
-      hdf5 \
- && sudo yum update -y \
- && sudo yum install -y uuid-devel x11-devel motif-devel gcc-gfortran \
- && cd /opt/conda/lib \
- && sudo unlink libuuid.so \
- && sudo unlink libuuid.so.1 \
- && sudo ln -s /lib64/libuuid.so.1.3.0 libuuid.so \
- && sudo ln -s /lib64/libuuid.so.1.3.0 libuuid.so.1 \
- && cd /lib64 \
- && ( test -f libgfortran.so || sudo ln -sv libgfortran.so.*.* libgfortran.so ) \
- && sudo yum install -y /tmp/isce-2.3-1.x86_64.rpm \
- && sudo yum clean all \
- && sudo rm -rf /var/cache/yum \
- && sudo rm /tmp/isce-2.3-1.x86_64.rpm
+ && apt-get update \
+ && apt-get install -y \
+    libfftw3-3 \
+    libgdal26 \
+    libhdf4-0 \
+    libhdf5-103 \
+    libopencv-core4.2 \
+    libopencv-highgui4.2 \
+    libopencv-imgproc4.2 \
+    python3-gdal \
+    python3-h5py \
+    python3-numpy \
+    python3-scipy \
+ && echo done
+
+# install ISCE from DEB
+COPY --from=builder /tmp/isce*.deb /tmp/isce2.deb
+
+RUN dpkg -i /tmp/isce2.deb