diff --git a/components/isceobj/StripmapProc/runRubbersheet.py b/components/isceobj/StripmapProc/runRubbersheet.py index b16a58e..ea417bd 100644 --- a/components/isceobj/StripmapProc/runRubbersheet.py +++ b/components/isceobj/StripmapProc/runRubbersheet.py @@ -6,7 +6,6 @@ import isce import isceobj from osgeo import gdal -from scipy import ndimage import numpy as np import os @@ -24,6 +23,9 @@ def fill(data, invalid=None): Output: Return a filled array. """ + + from scipy import ndimage + if invalid is None: invalid = np.isnan(data) ind = ndimage.distance_transform_edt(invalid, @@ -35,6 +37,8 @@ def fill(data, invalid=None): def mask_filter(denseOffsetFile, snrFile, band, snrThreshold, filterSize, outName): #masking and Filtering + from scipy import ndimage + ##Read in the offset file ds = gdal.Open(denseOffsetFile + '.vrt', gdal.GA_ReadOnly) Offset = ds.GetRasterBand(1).ReadAsArray() diff --git a/components/isceobj/StripmapProc/runRubbersheetAzimuth.py b/components/isceobj/StripmapProc/runRubbersheetAzimuth.py index 75583f1..43ee4a8 100755 --- a/components/isceobj/StripmapProc/runRubbersheetAzimuth.py +++ b/components/isceobj/StripmapProc/runRubbersheetAzimuth.py @@ -9,14 +9,14 @@ import isce import isceobj from osgeo import gdal -from scipy import ndimage -from astropy.convolution import convolve import numpy as np import os def mask_filterNoSNR(denseOffsetFile,filterSize,outName): # Masking the offsets with a data-based approach - + + from scipy import ndimage + # Open the offsets ds = gdal.Open(denseOffsetFile+'.vrt',gdal.GA_ReadOnly) off_az = ds.GetRasterBand(1).ReadAsArray() @@ -79,6 +79,9 @@ def mask_filterNoSNR(denseOffsetFile,filterSize,outName): def off_masking(off,filterSize,thre=2): + + from scipy import ndimage + # Define the mask to fill the offsets vram = ndimage.median_filter(off.real, filterSize) vazm = ndimage.median_filter(off.imag, filterSize) @@ -112,6 +115,8 @@ def fill(data, invalid=None): def mask_filter(denseOffsetFile, snrFile, band, snrThreshold, filterSize, outName): #masking and Filtering + from scipy import ndimage + ##Read in the offset file ds = gdal.Open(denseOffsetFile + '.vrt', gdal.GA_ReadOnly) Offset = ds.GetRasterBand(band).ReadAsArray() @@ -154,7 +159,9 @@ def mask_filter(denseOffsetFile, snrFile, band, snrThreshold, filterSize, outNam return None def fill_with_smoothed(off,filterSize): - + + from astropy.convolution import convolve + off_2filt=np.copy(off) kernel = np.ones((filterSize,filterSize),np.float32)/(filterSize*filterSize) loop = 0 diff --git a/components/isceobj/StripmapProc/runRubbersheetRange.py b/components/isceobj/StripmapProc/runRubbersheetRange.py index 2f1ab3f..04fc2a2 100755 --- a/components/isceobj/StripmapProc/runRubbersheetRange.py +++ b/components/isceobj/StripmapProc/runRubbersheetRange.py @@ -9,15 +9,14 @@ import isce import isceobj from osgeo import gdal -from scipy import ndimage import numpy as np import os -from astropy.convolution import convolve - def mask_filterNoSNR(denseOffsetFile,filterSize,outName): # Masking the offsets with a data-based approach - + + from scipy import ndimage + # Open the offsets ds = gdal.Open(denseOffsetFile+'.vrt',gdal.GA_ReadOnly) off_az = ds.GetRasterBand(1).ReadAsArray() @@ -78,6 +77,9 @@ def mask_filterNoSNR(denseOffsetFile,filterSize,outName): return def off_masking(off,filterSize,thre=2): + + from scipy import ndimage + vram = ndimage.median_filter(off.real, filterSize) vazm = ndimage.median_filter(off.imag, filterSize) @@ -100,6 +102,8 @@ def fill(data, invalid=None): Output: Return a filled array. """ + from scipy import ndimage + if invalid is None: invalid = np.isnan(data) ind = ndimage.distance_transform_edt(invalid, @@ -108,7 +112,9 @@ def fill(data, invalid=None): return data[tuple(ind)] def fill_with_smoothed(off,filterSize): - + + from astropy.convolution import convolve + off_2filt=np.copy(off) kernel = np.ones((filterSize,filterSize),np.float32)/(filterSize*filterSize) loop = 0 @@ -131,6 +137,8 @@ def fill_with_smoothed(off,filterSize): def mask_filter(denseOffsetFile, snrFile, band, snrThreshold, filterSize, outName): #masking and Filtering + from scipy import ndimage + ##Read in the offset file ds = gdal.Open(denseOffsetFile + '.vrt', gdal.GA_ReadOnly) Offset = ds.GetRasterBand(band).ReadAsArray() @@ -236,6 +244,8 @@ def resampleOffset(maskedFiltOffset, geometryOffset, outName): def runRubbersheetRange(self): + from scipy import ndimage + if not self.doRubbersheetingRange: print('Rubber sheeting in azimuth not requested ... skipping') return