actual issue is missing libgfortran.so link in /lib64
parent
ec27ebb129
commit
359ab771ba
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@ -24,14 +24,15 @@ jobs:
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mkdir config build install
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. /opt/conda/bin/activate root
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conda install --yes cython gdal h5py libgdal pytest numpy fftw scipy basemap scons opencv hdf4 hdf5 netcdf4 libgcc libstdcxx-ng cmake
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yum install -y uuid-devel x11-devel motif-devel jq
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yum install -y uuid-devel x11-devel motif-devel jq gcc-gfortran
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ln -s /opt/conda/bin/cython /opt/conda/bin/cython3
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cd /opt/conda/lib
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unlink libuuid.so
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unlink libuuid.so.1
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ln -s /lib64/libuuid.so.1.3.0 libuuid.so
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ln -s /lib64/libuuid.so.1.3.0 libuuid.so.1
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yum install -y gcc-gfortran
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cd /lib64
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test -f libgfortran.so || ln -sv libgfortran.so.*.* libgfortran.so
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- run:
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name: Build SConfigISCE and setup dirs
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@ -52,7 +53,6 @@ jobs:
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echo "MOTIFINCPATH = /usr/include" >> SConfigISCE
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echo "X11INCPATH = /usr/include" >> SConfigISCE
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echo "RPATH = /opt/conda/lib /usr/lib64 /usr/lib" >> SConfigISCE
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echo "LINKFLAGS = -L/lib64 -lgfortran" >> SConfigISCE
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cat SConfigISCE
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- run:
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@ -50,14 +50,11 @@ RUN set -ex \
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&& ln -s /lib64/libuuid.so.1.3.0 libuuid.so \
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&& ln -s /lib64/libuuid.so.1.3.0 libuuid.so.1
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# install libgfortran.so.3
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# install libgfortran.so.3 and create missing link
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RUN set -ex \
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&& yum install -y gcc-gfortran \
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&& cd /opt/conda/lib \
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&& unlink libgfortran.so \
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&& unlink libgfortran.so.4 \
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&& ln -s /lib64/libgfortran.so.3.0.0 libgfortran.so \
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&& ln -s /lib64/libgfortran.so.3.0.0 libgfortran.so.4
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&& cd /lib64 \
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&& ( test -f libgfortran.so || ln -sv libgfortran.so.*.* libgfortran.so )
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# copy repo
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COPY . /root/isce2
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@ -107,17 +104,14 @@ RUN set -ex \
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hdf5 \
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netcdf4 \
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&& sudo yum update -y \
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&& sudo yum install -y uuid-devel x11-devel motif-devel \
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&& sudo yum install -y uuid-devel x11-devel motif-devel gcc-gfortran \
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&& cd /opt/conda/lib \
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&& sudo unlink libuuid.so \
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&& sudo unlink libuuid.so.1 \
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&& sudo ln -s /lib64/libuuid.so.1.3.0 libuuid.so \
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&& sudo ln -s /lib64/libuuid.so.1.3.0 libuuid.so.1 \
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&& sudo yum install -y gcc-gfortran \
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&& sudo unlink libgfortran.so \
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&& sudo unlink libgfortran.so.4 \
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&& sudo ln -s /lib64/libgfortran.so.3.0.0 libgfortran.so \
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&& sudo ln -s /lib64/libgfortran.so.3.0.0 libgfortran.so.4 \
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&& cd /lib64 \
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&& ( test -f libgfortran.so || sudo ln -sv libgfortran.so.*.* libgfortran.so ) \
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&& sudo yum install -y /tmp/isce-2.0-1.x86_64.rpm \
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&& sudo yum clean all \
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&& sudo rm -rf /var/cache/yum \
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