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ISCE_INSAR
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actual issue is missing libgfortran.so link in /lib64

LT1AB
Gerald Manipon 2019-04-17 15:12:25 -07:00
parent ec27ebb129
commit 359ab771ba
2 changed files with 9 additions and 15 deletions
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6
.circleci/config.yml
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@ -24,14 +24,15 @@ jobs:
mkdir config build install mkdir config build install
. /opt/conda/bin/activate root . /opt/conda/bin/activate root
conda install --yes cython gdal h5py libgdal pytest numpy fftw scipy basemap scons opencv hdf4 hdf5 netcdf4 libgcc libstdcxx-ng cmake conda install --yes cython gdal h5py libgdal pytest numpy fftw scipy basemap scons opencv hdf4 hdf5 netcdf4 libgcc libstdcxx-ng cmake
yum install -y uuid-devel x11-devel motif-devel jq yum install -y uuid-devel x11-devel motif-devel jq gcc-gfortran
ln -s /opt/conda/bin/cython /opt/conda/bin/cython3 ln -s /opt/conda/bin/cython /opt/conda/bin/cython3
cd /opt/conda/lib cd /opt/conda/lib
unlink libuuid.so unlink libuuid.so
unlink libuuid.so.1 unlink libuuid.so.1
ln -s /lib64/libuuid.so.1.3.0 libuuid.so ln -s /lib64/libuuid.so.1.3.0 libuuid.so
ln -s /lib64/libuuid.so.1.3.0 libuuid.so.1 ln -s /lib64/libuuid.so.1.3.0 libuuid.so.1
yum install -y gcc-gfortran cd /lib64
test -f libgfortran.so || ln -sv libgfortran.so.*.* libgfortran.so
- run: - run:
name: Build SConfigISCE and setup dirs name: Build SConfigISCE and setup dirs
@ -52,7 +53,6 @@ jobs:
echo "MOTIFINCPATH = /usr/include" >> SConfigISCE echo "MOTIFINCPATH = /usr/include" >> SConfigISCE
echo "X11INCPATH = /usr/include" >> SConfigISCE echo "X11INCPATH = /usr/include" >> SConfigISCE
echo "RPATH = /opt/conda/lib /usr/lib64 /usr/lib" >> SConfigISCE echo "RPATH = /opt/conda/lib /usr/lib64 /usr/lib" >> SConfigISCE
echo "LINKFLAGS = -L/lib64 -lgfortran" >> SConfigISCE
cat SConfigISCE cat SConfigISCE
- run: - run:

18
docker/Dockerfile
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@ -50,14 +50,11 @@ RUN set -ex \
&& ln -s /lib64/libuuid.so.1.3.0 libuuid.so \ && ln -s /lib64/libuuid.so.1.3.0 libuuid.so \
&& ln -s /lib64/libuuid.so.1.3.0 libuuid.so.1 && ln -s /lib64/libuuid.so.1.3.0 libuuid.so.1
# install libgfortran.so.3 # install libgfortran.so.3 and create missing link
RUN set -ex \ RUN set -ex \
&& yum install -y gcc-gfortran \ && yum install -y gcc-gfortran \
&& cd /opt/conda/lib \ && cd /lib64 \
&& unlink libgfortran.so \ && ( test -f libgfortran.so || ln -sv libgfortran.so.*.* libgfortran.so )
&& unlink libgfortran.so.4 \
&& ln -s /lib64/libgfortran.so.3.0.0 libgfortran.so \
&& ln -s /lib64/libgfortran.so.3.0.0 libgfortran.so.4
# copy repo # copy repo
COPY . /root/isce2 COPY . /root/isce2
@ -107,17 +104,14 @@ RUN set -ex \
hdf5 \ hdf5 \
netcdf4 \ netcdf4 \
&& sudo yum update -y \ && sudo yum update -y \
&& sudo yum install -y uuid-devel x11-devel motif-devel \ && sudo yum install -y uuid-devel x11-devel motif-devel gcc-gfortran \
&& cd /opt/conda/lib \ && cd /opt/conda/lib \
&& sudo unlink libuuid.so \ && sudo unlink libuuid.so \
&& sudo unlink libuuid.so.1 \ && sudo unlink libuuid.so.1 \
&& sudo ln -s /lib64/libuuid.so.1.3.0 libuuid.so \ && sudo ln -s /lib64/libuuid.so.1.3.0 libuuid.so \
&& sudo ln -s /lib64/libuuid.so.1.3.0 libuuid.so.1 \ && sudo ln -s /lib64/libuuid.so.1.3.0 libuuid.so.1 \
&& sudo yum install -y gcc-gfortran \ && cd /lib64 \
&& sudo unlink libgfortran.so \ && ( test -f libgfortran.so || sudo ln -sv libgfortran.so.*.* libgfortran.so ) \
&& sudo unlink libgfortran.so.4 \
&& sudo ln -s /lib64/libgfortran.so.3.0.0 libgfortran.so \
&& sudo ln -s /lib64/libgfortran.so.3.0.0 libgfortran.so.4 \
&& sudo yum install -y /tmp/isce-2.0-1.x86_64.rpm \ && sudo yum install -y /tmp/isce-2.0-1.x86_64.rpm \
&& sudo yum clean all \ && sudo yum clean all \
&& sudo rm -rf /var/cache/yum \ && sudo rm -rf /var/cache/yum \