ISCE_INSAR/contrib/timeseries/prepStackToStaMPS/bin/get_quickview_isce

#!/bin/bash
#
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# copyright: 2016 to the present, california institute of technology.
# all rights reserved. united states government sponsorship acknowledged.
#
# THESE SCRIPTS ARE PROVIDED TO YOU "AS IS" WITH NO WARRANTIES OF CORRECTNESS. USE AT YOUR OWN RISK.
#
# Author: David Bekaert
# Organization: Jet Propulsion Laboratory, California Institute of Technology
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

# see if it are azimuth ifgs or not
if [ $# == 0  ];then
   file_in=isce_minrefdem.int
else
   file_in=$1
fi

echo "----------------------------------------------------------------------"
echo "For interferograms: get_quickview_isce isce_minrefdem.int"
echo "For coh inteferograms: get_quickview_isce isce_minrefdem.coh"
echo "For filt interferograms: get_quickview_isce isce_minrefdem_filt.int"
echo "For filt coh inteferograms: get_quickview_isce isce_minrefdem_filt.coh"
echo "For slcs: get_quickview_isce date.slc"
echo "----------------------------------------------------------------------"


# adding option for user to overwrite file if needed
overwrite_flag=`grep overwrite input_file | awk '{print $2}'`
overwrite=1
if [ "$overwrite_flag" == "n" ] || [ "$overwrite_flag" == "no" ];
then
    # do not overwrite existing the files
    overwrite=0         
    echo Will not overwrite existing files            
else
    echo will overwrite
fi

# locating the input file
input=input_file
counter=1
while [ $counter -lt 10 ];
do
   if [ -f $input ];
   then
       let counter=counter+10000
   else
       input=../$input
   fi
   let counter=counter+1
done
echo $input
if [ ! -f $input ];
then
    echo "Cannot find input file"
    exit 1
fi

# getting the aspect ratio and the number of looks that needs to be taken
ar=`grep aspect_ratio $input | awk '{print $2}'`
r_looks=`grep range_looks $input | awk '{print $2}'`
a_looks=`grep azimuth_looks $input | awk '{print $2}'`

# check if the az looks are given seperate, if so, overwrite the number of az looks defined through aspect ratio
if [ -z $a_looks ];
then
    # computing the azimuth looks based on the aspect ratio
    a_looks=`echo "$(($ar * $r_looks))"`
else
    echo "Found seperate az_looks variable which will over-rule the ar"
fi

# giving a summary to the user
echo number of range looks: $r_looks
echo number of azimuth looks: $a_looks

# find the name of the multi-looked product
# defining the output name based on the number of looks taken
filename_out=`basename $file_in | cut -d. -f1`
extension_out=`basename $file_in | cut -d. -f2`
wkfile=${filename_out}_${r_looks}l.${extension_out}

echo "Trying to make figures for: $wkfile"

# loop over a few default cases
if [ $file_in == isce_minrefdem.int ]; then
   echo "Looks like regular IFG, store in figures_ifgs_${r_looks}l"
   wkdir=figures_ifgs_${r_looks}l
elif [ $file_in == isce_minrefdem_filt.int ]; then
   echo "Looks like filt IFG, store in figures_ifgs_filt_${r_looks}l"
   wkdir=figures_ifgs_filt_${r_looks}l
elif [ $file_in == isce_minrefdem.coh ]; then
   echo "Looks like COH, store in figures_cohs_${r_looks}l"
   wkdir=figures_cohs_${r_looks}l
elif [ $file_in == isce_minrefdem_filt.coh ]; then
   echo "Looks like filt COH, store in figures_cohs_filt_${r_looks}l"
   wkdir=figures_cohs_filt_${r_looks}l
elif [ $file_in == date.slc ]; then
   echo "Looks like SLC, store in figures_slc_${r_looks}l"
   wkdir=figures_slc_${r_looks}l
else
   echo "Not a supported filename"
   exit 1
fi
# backup original input file
file_in_or=$file_in



slctemp=`pwd | awk '{print substr($0,length-2)}'`
# exit for the SLC's when SB as these can only be ran for SM
flag_slc=0
if [ $file_in_or == date.slc ]
then
	if ! [ $slctemp == SLC ] 
        	then
        	echo "SLC figure generation only for SLC directory"
        	exit 1
	fi
  	echo "SLC"
        flag_slc=1
fi

# make the directory
if [ ! -d $wkdir ]; then
    mkdir -p $wkdir;
fi

# see if small baselines or not
mastertemp=`pwd | awk '{print substr($0,length-7)}'`
dir=pwd
# what type of processing has been done
flag_sb=0
flag_sm=0
if [ $flag_slc == 0 ];
then
	if [ $mastertemp == ASELINES ]; then
	   echo "SMALL BASELINES"
	   flag_sb=1
	else
	   flag_sm=1
	fi
fi
if [ $flag_sm == 1 ]; then
    for folder in  `ls -d [0-9]*/`
    do
        # doing nothing just want one date
        master_slave=`basename $folder`
    done
    lengthstr=`echo "$master_slave" | awk '{print length($0)}'`
    if [ $lengthstr == 17 ]; then
        flag_sb=1
        echo "SMALL BASELINES"
    else
        echo "SINGLE MASTER"                                                                                                                           
        flag_sm=1
    fi
fi

# loop over the differnt ifgs folders
for folder in `ls -d [0-9]*/`
do
	echo $folder
	if [ $flag_sb == 1 ];
	then
		master_slave=`echo "$folder" | awk '{print substr($0,1,17)}'` 
	elif [ $flag_sm == 1 ]; 
	then
        	slave=`echo "$folder" | awk '{print substr($0,1,8)}'`
		master_slave=$mastertemp"_"$slave
	elif [ $flag_slc == 1 ];
	then
		master_slave=`basename $folder`
	fi
	echo $master_slave

	# if SLC the data of the folder will determine file name
	if  [ $file_in_or == date.slc ]
	then
		file_in=${master_slave}.${extension_out}
		wkfile=${master_slave}_${r_looks}l.${extension_out}
	fi


        # check if this file exist otherwize make the multi-looked products too
        files=`find $folder -name $wkfile -type f`
        # make files if needed
        if [ -z "$files" ] || [ "$overwrite"=="1" ]; then
           	cd $folder
		step_multilook_isce $file_in
 		cd ../ 
        fi

	# make files if needed
            cd $folder
            # use mdx to generate a raster file, move in folder such in case muktiple programs are run together it does not overwrite same file
            mdx.py -P $wkfile
	    cd ..

            # make the directory
            if [ ! -d $folder/$wkdir ]; then
                mkdir -p $folder/$wkdir;
            fi
    
    	    # convert from ppm files to png
            convert -despeckle -resize 50%  $folder/out.ppm $folder/$wkdir/ISCE_$master_slave.png
	    rm $folder/out.ppm
        cp $folder/$wkdir/ISCE_$master_slave.png $wkdir/.
done

cd $wkdir
convert +append `ls ISCE_[0-9]*.png` merged.png
cd ..